PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON52443.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | C2H2 | ||||||||
Protein Properties | Length: 506aa MW: 55307.2 Da PI: 8.6287 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.5e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PON52443.1 6 FICEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00024 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PON52443.1 83 WKCEKCSKRYAVQSDWKAHSKTC 105 58*****************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence |
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKNNK EQPKRKVFLC PEPTCVHHDP 60 SRALGDLTGI KKHYSRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCECGTLFSR 120 RDSLITHRAF CDALAQETAR HPSSLNTLGG HQIYGNSHVN LGLSQMGSQF SSLQHHPSTN 180 ILRLGSPTPK LENLIHPISS NPNSFGNAPQ NLPSSTFFIP DAPNQAFQSD HHHQPFLNKS 240 LHTLSQLPDL QTNNNNSSSA DIFNLGFFSN NGNTSSLRSD QFNFDGNGNG TPGIFSSISD 300 HMGAGPGMSA LYGGNNSSLR QENISPHMSA TSLLQKAAQI DSTSSLVDAS SLLRSLRDSA 360 ARVANKSDVR ELSTTSFGGD IAGNENHDHL QGLMNSLANN GSSSNVFGGF ITGAGASVDH 420 RQNNQNLCDQ LDQETENYNK LHQNLGVSFG SGSDKLTLDF LGVGEIVRNM QGGGMSSTNP 480 TMSSLDTQLK STQQSQLFGG TTSTLH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-111 | C2H2 family protein |