PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON52442.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 567aa MW: 60533.8 Da PI: 9.3707

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON52442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PON52442.1 74 FICEVCNKGFQREQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	13.2	0.00027	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PON52442.1 150 WKCEKCSKRYAVQSDWKAHSKTC 172 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MAAASSSSVP GLGINREEDQ NQMKQQHSST PTNSSSLAPA PPAQKKKRNQ PGTPNPDAEV 60 IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTNKEP KRKVYLCPEP 120 TCVHHDPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD 180 CGTLFSRDGG STGGVLTRRD SFITHRAFCD ALAQESARHP PNLSAIGANL YGGSNATSLG 240 LSQLGPQFSA LQDQTNQSGD ILRLGGASHH RSAPQPPTGQ FDHGHILSPT SFRSQQQPSA 300 AFFLPAEPNQ QYHHQEEHHH QQAQHGFLPN KPFHGLMQFS ELQSNANNVN PSTGLLISNH 360 FNAENGASGG GGGGGEGSNI FSGHINVGDQ MSSGAVPSLY SQSVQTNHAA ALAVAHMSAT 420 ALLQKAAQMG STSSNNSTAS LLRTFGTSSS SSGGQNKPSD RQGTVAQATF GGGGGGLFGA 480 ENDQNNLQDL MNSFAAAGNS SMFGGNAFGG YEAANRGNLD HQEQKLQANS GGGIAAMSNN 540 IGSGSDRLTR DFLGVGQIVR SWILEYM

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MAAASSSSVP GLGINREEDQ NQMKQQHSST PTNSSSLAPA PPAQKKKRNQ PGTPNPDAEV  60
IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTNKEP KRKVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH YSRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRDGG STGGVLTRRD SFITHRAFCD ALAQESARHP PNLSAIGANL YGGSNATSLG  240
LSQLGPQFSA LQDQTNQSGD ILRLGGASHH RSAPQPPTGQ FDHGHILSPT SFRSQQQPSA  300
AFFLPAEPNQ QYHHQEEHHH QQAQHGFLPN KPFHGLMQFS ELQSNANNVN PSTGLLISNH  360
FNAENGASGG GGGGGEGSNI FSGHINVGDQ MSSGAVPSLY SQSVQTNHAA ALAVAHMSAT  420
ALLQKAAQMG STSSNNSTAS LLRTFGTSSS SSGGQNKPSD RQGTVAQATF GGGGGGLFGA  480
ENDQNNLQDL MNSFAAAGNS SMFGGNAFGG YEAANRGNLD HQEQKLQANS GGGIAAMSNN  540
IGSGSDRLTR DFLGVGQIVR SWILEYM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-114	C2H2 family protein