PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON52347.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 466aa MW: 51181.2 Da PI: 8.8259

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON52347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	43	64	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + L H+ +H PON52347.1 43 VCKECGKGFQSLKALCGHMASH 64 6******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MSEKDHSGSE AGKQPGYILR ENPKKTRRFA DASGGALLKE LKVCKECGKG FQSLKALCGH 60 MASHSDKERF VINKYEQHSG TSEKQKLVMD SQSDTETSAP RQRRLSRRIR YKNLDVYSSM 120 GNGSSSVSGI EQEQQEVAIS LMLLSRDSGH KGGLNSVGES SDNNSVVLEA KSSSIDMIIS 180 GKKVLSSVTN LNETLEAKKA RDGELNFPKN VSVSDNSDSG YFRNGPKKIE SDVSVDGFVR 240 NGDFKKLEVE SGSGFGKNLL DEEGKDQVER GSSKYELRKR TRNGLYRPES LMGSYKNEAN 300 CSPSGGIYRN GQKRSKYECL TCKKTFHSHR ALGGHRANHT KNNGCCESIC ESGENSIETD 360 HSPIPVANDR LIENGTGKSP IKEDFAERKP VSKKSKGHEC PICFRIFKSG QALGGHKRSH 420 FVGGREANTM VIRQVPPEAE ITVLFDLNLP APTEEDANGD VGFVAW

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MSEKDHSGSE AGKQPGYILR ENPKKTRRFA DASGGALLKE LKVCKECGKG FQSLKALCGH  60
MASHSDKERF VINKYEQHSG TSEKQKLVMD SQSDTETSAP RQRRLSRRIR YKNLDVYSSM  120
GNGSSSVSGI EQEQQEVAIS LMLLSRDSGH KGGLNSVGES SDNNSVVLEA KSSSIDMIIS  180
GKKVLSSVTN LNETLEAKKA RDGELNFPKN VSVSDNSDSG YFRNGPKKIE SDVSVDGFVR  240
NGDFKKLEVE SGSGFGKNLL DEEGKDQVER GSSKYELRKR TRNGLYRPES LMGSYKNEAN  300
CSPSGGIYRN GQKRSKYECL TCKKTFHSHR ALGGHRANHT KNNGCCESIC ESGENSIETD  360
HSPIPVANDR LIENGTGKSP IKEDFAERKP VSKKSKGHEC PICFRIFKSG QALGGHKRSH  420
FVGGREANTM VIRQVPPEAE ITVLFDLNLP APTEEDANGD VGFVAW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-83	C2H2 family protein