PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON51466.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family WOX
Protein Properties Length: 300aa    MW: 33120.7 Da    PI: 8.3898
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON51466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.3e-213291357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                +R+++tkeq++ Le+l+++  r+psae++++++++l    +++ ++V++WFqN++a++++
  PON51466.1 32 SRWNPTKEQINMLESLYKQgIRTPSAEQIQQITTRLrafgHIEGKNVFYWFQNHKARQRQ 91
                7*****************99**************************************96 PP
2Wus_type_Homeobox115.13.4e-373193365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RW+Pt+eQi++Le+lyk+G+rtP++e+iq+it++L+++G+ie+kNVfyWFQN+kaR+rqkq
         PON51466.1 31 SSRWNPTKEQINMLESLYKQGIRTPSAEQIQQITTRLRAFGHIEGKNVFYWFQNHKARQRQKQ 93
                       79***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MEGDHSNVEM NSSNSSSTSC GTCSNGAPAG SSRWNPTKEQ INMLESLYKQ GIRTPSAEQI  60
QQITTRLRAF GHIEGKNVFY WFQNHKARQR QKQKQESMAY INRFVHRTTH PKFPSNSHPC  120
PNVVCGPYYL PVVQQPHDHT GIHQQHQYPS KVPLSNSIRR RSPIRLDKLE KSSTTTRIIC  180
CAAGAGYEPV PTQAAGGILY TTDIGGSGAG GFEPARAVGS TEKLIGNSSS SCEQETLSLF  240
PVRPTGILQG KEENSHIMAY ENPATNYRSS ISNPSSSSEV DQEACSSGYH DQPFYDFFSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-50WOX family protein