PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON49219.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 261aa MW: 29192.3 Da PI: 7.291 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.1 | 7.1e-16 | 11 | 55 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 i+++ r +tf +R++g+ KKA+E S+LCd ev++ + +++ l+ PON49219.1 11 IKEEKSRLTTFQRRKKGLVKKASEFSTLCDSEVCLFVSAPQSDLK 55 889999*******************************99988775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MGRGKVKLEL IKEEKSRLTT FQRRKKGLVK KASEFSTLCD SEVCLFVSAP QSDLKVVSAS 60 GIETFPPESD RVLGVVEKYK KAVMQRPPKC KSYHPTGPPL AKPNRNKYCD SKYPTLSELV 120 DGFSADELSE LVSRLDRKIE IVKKVIEGKK EENAPDPMIM IRNDGVIHNH MDDQQLHDIV 180 YDDDDDDSDF VRAEAMLDHQ NMTSNNAQFR GQECMMMLSG AATAAPSPNS LAHPHNAVHA 240 VPLPHECGAQ YLLIPKRGRP H |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 7e-14 | MIKC_MADS family protein |