PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON44185.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 765aa MW: 85166.1 Da PI: 6.2015

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON44185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	98	120	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC +C++ F ++ n++rHir+ H PON44185.1 98 KCDKCSQEFCSPINYRRHIRVdH 120 7*******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence
MTIAKLEAAN NPDVMNSEEG NGSVDAIRKE PFLNFPWAGD SSVQFIQLLH ALEQQGASSR 60 LEALSNPTVS GKHEAHGYLS DLHQSWPLVS PLKIQPQKCD KCSQEFCSPI NYRRHIRVDH 120 RSKKIDKDST QNRDMLGGFW DKLSLEDAKE VVSLKNVTLE EVSGSSIINA LSSHVRKSGF 180 SSPQHPYLKA GSDLLDIVQG RPSRFPISSQ ELFAVLDRAS ENTFLSGSAV SMQRYVFDGE 240 AGKIGLETKK LVACTSFLLE QKLVKAWIAD KNAEVLRFQK LLVEEEEAAR KRQAEVLEKK 300 KQKKLRQKER KAKDQQHGEK ADIDERIDQG LVAMPQAETL SQVDCDSHID TPDMPDQIPS 360 SIFEQFNSDG NFNPEFQMVS DVEHVEEQSQ GEKADIDESV DQGLVIMLQA ETSSQVECDS 420 HIDTPDVPNR IPSSVVEHSN YDGNLDPEFQ TRSDGARVDS GNNSGDWQFV RASGRRRRQQ 480 ASPKSQRVPS TSHHAAQSSQ ASKLGVQQNR GTHWDPRTAS TARKVWNQKA KPETEGDTLK 540 ARLQKEALNE QDQIKNREVL IGSVAVTVRN CSQEGNNLSK ACDTESQMPK NSVQVKPNKP 600 ADPVRSGTSR PMVMFWRPKK WKGIEVTIPI QDSSRASEVD NNAEKGHTGT LCSTETGISE 660 ITSDAVKAFL AERWKETTMA DHVKLVLTPD SEPIDLPDIE HDTQETGSLT LKFHRRSILG 720 DAENRLVNVD IIGCPTAGVT KAKFRTESEE GVKKKDNPKE RTIPT

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence

MTIAKLEAAN NPDVMNSEEG NGSVDAIRKE PFLNFPWAGD SSVQFIQLLH ALEQQGASSR  60
LEALSNPTVS GKHEAHGYLS DLHQSWPLVS PLKIQPQKCD KCSQEFCSPI NYRRHIRVDH  120
RSKKIDKDST QNRDMLGGFW DKLSLEDAKE VVSLKNVTLE EVSGSSIINA LSSHVRKSGF  180
SSPQHPYLKA GSDLLDIVQG RPSRFPISSQ ELFAVLDRAS ENTFLSGSAV SMQRYVFDGE  240
AGKIGLETKK LVACTSFLLE QKLVKAWIAD KNAEVLRFQK LLVEEEEAAR KRQAEVLEKK  300
KQKKLRQKER KAKDQQHGEK ADIDERIDQG LVAMPQAETL SQVDCDSHID TPDMPDQIPS  360
SIFEQFNSDG NFNPEFQMVS DVEHVEEQSQ GEKADIDESV DQGLVIMLQA ETSSQVECDS  420
HIDTPDVPNR IPSSVVEHSN YDGNLDPEFQ TRSDGARVDS GNNSGDWQFV RASGRRRRQQ  480
ASPKSQRVPS TSHHAAQSSQ ASKLGVQQNR GTHWDPRTAS TARKVWNQKA KPETEGDTLK  540
ARLQKEALNE QDQIKNREVL IGSVAVTVRN CSQEGNNLSK ACDTESQMPK NSVQVKPNKP  600
ADPVRSGTSR PMVMFWRPKK WKGIEVTIPI QDSSRASEVD NNAEKGHTGT LCSTETGISE  660
ITSDAVKAFL AERWKETTMA DHVKLVLTPD SEPIDLPDIE HDTQETGSLT LKFHRRSILG  720
DAENRLVNVD IIGCPTAGVT KAKFRTESEE GVKKKDNPKE RTIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	305	EKKKQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	3e-87	C2H2 family protein