PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G25610.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 586aa    MW: 66002.4 Da    PI: 9.7787
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G25610.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000296283223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 kC++C++ F ++ n++rH r+H
  AT4G25610.1 62 KCEKCSREFCSPVNFRRHNRMH 83
                 7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.9286188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENTPVQLFQ LLHTLERPGW PLLTPLKIQM  60
QKCEKCSREF CSPVNFRRHN RMHRRQRKPE KDFGKERDAL GAFWNKLSAT DAKEILSVKS  120
MMLEDIPGAS VESGLMSLIE KPGYTALPQY YLRAGSGLLD LLQARPPRLP ISSQELFSIL  180
DDASEKTFLS SEAAPMQKYI FDGEIGKTVL EAKNVVACAS FLLEQRLIKA WLADKDAEAL  240
RCQNLLVEEE EAARRRKAEL LERKKRKKLR QKEQREKDQK KDAKEDESTT SEEQQYPAEP  300
SSPLSVASDS EAQTPDSLPI DDSSSLEEPQ VLETNNGRNS ETQVPMVDGL DNGQNMERRS  360
GRRQMQRSQQ GMPNGFHADH APNLGGMRKN GTNRDARANT TKVWSRKSDN PKLISQHAAV  420
TQQDQTKSSE FIVGSLSVSI RNSGEHNQTK CSEGERRTKT VEVKPASEQS TVKIWRPVSS  480
QGRKTSTVNG NTDKEDKRSN PTTPEVKNAH HISLQFNNHE AKAFLAKRWK EATSAEHVTL  540
VLSQETDISG NNTHESSNGV ITARSKLRTK AEKGTKVKYV PKQRIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253267RRRKAELLERKKRKK
2261268ERKKRKKL
3263267KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.698940.0root| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453443090.0
Genevisible245230_at0.0
Expression AtlasAT4G25610-
AtGenExpressAT4G25610-
ATTED-IIAT4G25610-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G25610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G25610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0812940.0AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
GenBankBT0003860.0BT000386.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001328116.10.0C2H2-like zinc finger protein
RefseqNP_194291.20.0C2H2-like zinc finger protein
TrEMBLA0A384LH200.0A0A384LH20_ARATH; Uncharacterized protein
TrEMBLQ8RXF00.0Q8RXF0_ARATH; C2H2-like zinc finger protein
STRINGAT4G25610.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Representative plantOGRP36431115
Publications ? help Back to Top
  1. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  2. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]