PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON42215.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 393aa MW: 43089.6 Da PI: 8.2291

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON42215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp C+ksF++ L H r H PON42215.1 58 FACPLCDKSFNSGKALGGHKRIH 80 78***************999998 PP
2	zf-C2H2	18	7.7e-06	122	142	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp C k F++k++L H+r+H PON42215.1 122 CPMCLKIFPSKMSLFGHMRSH 142 ********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MEEVGSFADI SMPSTVKTSG ATSDIERLCL KLKIPEPQHY KEKEENKEEE EEEVVLRFAC 60 PLCDKSFNSG KALGGHKRIH NQQPTTTTFT SNIYSSNGSI GNFNNKATKD QTTGSRSGTN 120 ICPMCLKIFP SKMSLFGHMR SHPERSWRGI EPPATSSPPL LLLPKPTCTS ISSTDHDHDH 180 HVLDHDDHDR IIIDLAAAPP LVNWAVTAKR GRKSLTRSAT STSPAAASAI TTASASRDDN 240 DSSARSALED RMKKAVLDLM TLARASPAAT NYNNRPAAPP KDHKNIIFKK RKFAEYSDCH 300 SSQNIRMQKP KPKLVTKASS ASGHCNYVCS VCERSFPCYQ ALGGHMSIHK KAAPATAPAP 360 APAPRLLNID LNQPPPPDDD DVDDDQWLLL QQF

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MEEVGSFADI SMPSTVKTSG ATSDIERLCL KLKIPEPQHY KEKEENKEEE EEEVVLRFAC  60
PLCDKSFNSG KALGGHKRIH NQQPTTTTFT SNIYSSNGSI GNFNNKATKD QTTGSRSGTN  120
ICPMCLKIFP SKMSLFGHMR SHPERSWRGI EPPATSSPPL LLLPKPTCTS ISSTDHDHDH  180
HVLDHDDHDR IIIDLAAAPP LVNWAVTAKR GRKSLTRSAT STSPAAASAI TTASASRDDN  240
DSSARSALED RMKKAVLDLM TLARASPAAT NYNNRPAAPP KDHKNIIFKK RKFAEYSDCH  300
SSQNIRMQKP KPKLVTKASS ASGHCNYVCS VCERSFPCYQ ALGGHMSIHK KAAPATAPAP  360
APAPRLLNID LNQPPPPDDD DVDDDQWLLL QQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	9e-12	C2H2 family protein