PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G26940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 286aa MW: 33349.9 Da PI: 7.5571 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 120 | 141 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F + ++L H+r+H AT2G26940.1 120 RCCLCGKEFQTMHSLFGHMRRH 141 7********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.63E-7 | 47 | 71 | No hit | No description |
SMART | SM00355 | 1.3 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.912 | 49 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.012 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.63E-7 | 114 | 141 | No hit | No description |
PROSITE profile | PS50157 | 9.806 | 119 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.091 | 119 | 141 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.6E-4 | 120 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 121 | 141 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MKRTRDLYGD ESSSSESEEF HREKIRVKVK LPEERSEDED ESPQPQRKHF CVICEKQFSS 60 GKAYGGHVRI HSIEYNNKGK MKKMKKMKLK KKKKRKIGLV KKEKEKEIDL ARTDVEGKIR 120 CCLCGKEFQT MHSLFGHMRR HPDRTWKGIR PPPPSEKFNL SYLDDDVDDE DEDDDDVMSR 180 SMMMSDVPED VQGAACILMM LSYASRNYWA GIEESPKSEV RSSSFYKDDE GKDKVLGDSR 240 MDEKKGLIVD MKIKMEMEVK VNSPRDEAKR SLGFDLNQPP YHEDHP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 94 | KKMKLKKKKKR |
2 | 89 | 95 | KKKKKRK |
3 | 89 | 101 | KKKKKRKIGLVKK |
4 | 90 | 95 | KKKKRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18401279 | 0.0 | ||||
Genevisible | 266854_at | 0.0 | ||||
Expression Atlas | AT2G26940 | - | ||||
AtGenExpress | AT2G26940 | - | ||||
ATTED-II | AT2G26940 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G26940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G26940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005168 | 0.0 | AC005168.3 Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_180262.1 | 0.0 | C2H2-type zinc finger family protein | ||||
TrEMBL | O81013 | 0.0 | O81013_ARATH; C2H2-type zinc finger family protein | ||||
STRING | AT2G26940.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11455 | 20 | 29 | Representative plant | OGRP12491 | 3 | 5 |
Link Out ? help Back to Top | |
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Phytozome | AT2G26940.1 |
Entrez Gene | 817235 |
iHOP | AT2G26940 |
wikigenes | AT2G26940 |
Publications ? help Back to Top | |||
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