PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON39517.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 381aa MW: 42222.9 Da PI: 8.625

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON39517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	142	165	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F + +L++H+ + H PON39517.1 142 FPCTACGEIFQKPQLLEQHQAVkH 165 89******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MAPNIASLFT KYLSHFFLLF LHLGCFVFTT TTNTTDEDLR RHGYNDRRSS KKRKTQKALS 60 SSWSFIKGIF SSKSRKTSIQ THPSTPPRSS QHSIVSLVNP EPSDHLSAAD PPRKKSSPPP 120 ESDIAAGVGE GGLFFPLRND IFPCTACGEI FQKPQLLEQH QAVKHAVSEL HDGDSGKNIV 180 RIIFKSGWTD TLRSPVIHRV LKIHNGSKIL TRFEEYREAV KSKAARNGAV TRTRDERCIA 240 DGNELLRFHC STFLCDLGAN GNSGICNHQY CSVCGIIKSG FSPKLDGIST LSSSWRAHVA 300 IPEEIEEEFR FMNVKRAMLV CRVVAGRVGS ESDDVEKEEG GGFDSVLGRS GSGVHTRLDE 360 EELLVFNPRA VLPCFVIVYT V

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MAPNIASLFT KYLSHFFLLF LHLGCFVFTT TTNTTDEDLR RHGYNDRRSS KKRKTQKALS  60
SSWSFIKGIF SSKSRKTSIQ THPSTPPRSS QHSIVSLVNP EPSDHLSAAD PPRKKSSPPP  120
ESDIAAGVGE GGLFFPLRND IFPCTACGEI FQKPQLLEQH QAVKHAVSEL HDGDSGKNIV  180
RIIFKSGWTD TLRSPVIHRV LKIHNGSKIL TRFEEYREAV KSKAARNGAV TRTRDERCIA  240
DGNELLRFHC STFLCDLGAN GNSGICNHQY CSVCGIIKSG FSPKLDGIST LSSSWRAHVA  300
IPEEIEEEFR FMNVKRAMLV CRVVAGRVGS ESDDVEKEEG GGFDSVLGRS GSGVHTRLDE  360
EELLVFNPRA VLPCFVIVYT V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-118	C2H2 family protein