PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON38262.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 615aa MW: 70826.1 Da PI: 4.7543

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON38262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	306	326	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ PON38262.1 306 YCAVCGKKFKSEKQWKNHEQS 326 5*****************876 PP
2	zf-C2H2	12	0.00063	586	605	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cg+ F ++ L++H++ PON38262.1 586 TCEKCGEDFESRNKLHKHLS 605 6*****************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MAASGRRCHY EVLGLRQDST ADEIRSAYKK LALQLHPDKL VQSGLSQAEA TAKFQELVQA 60 YEVLSDPRER AWYDSHRSQI LFADPNSADS VPDSVIPNLF SYFSNTVYSG YSDKGTGFYK 120 VYSDVFNKIY ANEISFATKL GLGSNSVREA PAMGNLDCPY AQVTAFYGYW LGFSTVMDFC 180 WVDQYDAMAG PNRKSRRVME EENKKLRKKA KREYNETVRG LAEFVKKRDK RVIDMMVKRN 240 LEMEKKREEE RERKKRLEKE RLEKAMAYEE PEWSRIVEEE DEVEGDEDGF EEVDEKRKRD 300 EGKELYCAVC GKKFKSEKQW KNHEQSKKHR EKVAEFRDSI EDEDSLDVED EERNEVDDGA 360 DELGEQMRDG FRIGEEVVEE NNRDDEFYDD DNANKVEEKS GIDGEDDDDD DDDDDDDDNN 420 EKKEDEDDEM GVLEAMLTGR KNRKNRLPRR GPNETSSTSV HVENDSDDFD FRDYNNTKNT 480 RRKRGARKEK SKKKGEEIER DETNHNQNKE SNGDDNSQAE ESSSHSVVEN GINGKGDDSS 540 LDDNKKGSNQ RLDRKGIDTN TKSKNSSKAK GKKANAKATP KNSSNTCEKC GEDFESRNKL 600 HKHLSDTGHA ALKYR

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MAASGRRCHY EVLGLRQDST ADEIRSAYKK LALQLHPDKL VQSGLSQAEA TAKFQELVQA  60
YEVLSDPRER AWYDSHRSQI LFADPNSADS VPDSVIPNLF SYFSNTVYSG YSDKGTGFYK  120
VYSDVFNKIY ANEISFATKL GLGSNSVREA PAMGNLDCPY AQVTAFYGYW LGFSTVMDFC  180
WVDQYDAMAG PNRKSRRVME EENKKLRKKA KREYNETVRG LAEFVKKRDK RVIDMMVKRN  240
LEMEKKREEE RERKKRLEKE RLEKAMAYEE PEWSRIVEEE DEVEGDEDGF EEVDEKRKRD  300
EGKELYCAVC GKKFKSEKQW KNHEQSKKHR EKVAEFRDSI EDEDSLDVED EERNEVDDGA  360
DELGEQMRDG FRIGEEVVEE NNRDDEFYDD DNANKVEEKS GIDGEDDDDD DDDDDDDDNN  420
EKKEDEDDEM GVLEAMLTGR KNRKNRLPRR GPNETSSTSV HVENDSDDFD FRDYNNTKNT  480
RRKRGARKEK SKKKGEEIER DETNHNQNKE SNGDDNSQAE ESSSHSVVEN GINGKGDDSS  540
LDDNKKGSNQ RLDRKGIDTN TKSKNSSKAK GKKANAKATP KNSSNTCEKC GEDFESRNKL  600
HKHLSDTGHA ALKYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	230	RKSRRVMEEENKKLRKKAKREYNETVRGLAEFVKKRDK
2	204	212	KKLRKKAKR
3	440	446	RKNRKNR
4	568	574	KAKGKKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-149	C2H2 family protein