PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON37724.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 482aa MW: 53335.6 Da PI: 8.6911

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON37724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22	4.3e-07	278	300	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H PON37724.1 278 HYCQVCGKGFKRDANLRMHMRAH 300 68*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MNTNIHSAGD TTPCYTNLSS SSSGNLSLQM YPNIVSDQNH HHHHHVNVPS SSVGAAEVNI 60 NHSTNGLSSI LYSLSILKDK VSQVQSLAAI LLSPAEAAAA ADQTGSADST SVAIASMNNM 120 YNAIQEIMMT ASSMMFSFQQ MGLLSTSGNS SNSTEDHQWQ RLIKVNNNEN TNNTTQQPNF 180 YSSETVWFGT THDQNYNNNN ATTSTCVKDS NTTNTSNQMI MTHQRKNHRR PEENAFSLAL 240 GGETKGGGGG QGLNSTKNNN NFDIIELDAA DLLAKYTHYC QVCGKGFKRD ANLRMHMRAH 300 GDEYKTSAAL SNPMKKNNFI KNNVGPGGWI GDDEDEFSKK LLPKKYSCPQ EGCRWNKNHA 360 KFQPLKSMIC VKNHYKRSHC PKMYVCKRCN RKQFSVLSDL RTHEKHCGDL KWQCSCGTTF 420 SRKDKLLGHV ALFVGHTPLT MISSSTTNIS ANNKPAKVVL DHSQVSHHQQ IQLDHGIVKM 480 ME

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MNTNIHSAGD TTPCYTNLSS SSSGNLSLQM YPNIVSDQNH HHHHHVNVPS SSVGAAEVNI  60
NHSTNGLSSI LYSLSILKDK VSQVQSLAAI LLSPAEAAAA ADQTGSADST SVAIASMNNM  120
YNAIQEIMMT ASSMMFSFQQ MGLLSTSGNS SNSTEDHQWQ RLIKVNNNEN TNNTTQQPNF  180
YSSETVWFGT THDQNYNNNN ATTSTCVKDS NTTNTSNQMI MTHQRKNHRR PEENAFSLAL  240
GGETKGGGGG QGLNSTKNNN NFDIIELDAA DLLAKYTHYC QVCGKGFKRD ANLRMHMRAH  300
GDEYKTSAAL SNPMKKNNFI KNNVGPGGWI GDDEDEFSKK LLPKKYSCPQ EGCRWNKNHA  360
KFQPLKSMIC VKNHYKRSHC PKMYVCKRCN RKQFSVLSDL RTHEKHCGDL KWQCSCGTTF  420
SRKDKLLGHV ALFVGHTPLT MISSSTTNIS ANNKPAKVVL DHSQVSHHQQ IQLDHGIVKM  480
ME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	2e-88	C2H2 family protein