PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON36065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | LSD | ||||||||
Protein Properties | Length: 156aa MW: 16815.2 Da PI: 7.9345 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 30.5 | 6.1e-10 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL YP+GA+ V+ ++C+tV PON36065.1 67 CGSCHRLLKYPPGARQVQRSCCQTV 91 ************************9 PP | |||||||
2 | zf-LSD1 | 44.4 | 2.7e-14 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+ VRC++C++V PON36065.1 105 CGSCTVLLMYPYGASQVRCSSCQHV 129 ************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence |
MESKQVEEDD GPPPGYQSIL PSPQPPSSPL KLPPEPPPPT APPPQPPPTT LTPTTKTTPS 60 ETAQMVCGSC HRLLKYPPGA RQVQRSCCQT VNFVLEAHQV GQVKCGSCTV LLMYPYGASQ 120 VRCSSCQHVT EIGAHNRRPP WSVQQGQPLP GPNPCY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 6e-36 | LSD family protein |