PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON34088.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 353aa MW: 39392 Da PI: 6.3101

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON34088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l+ v +lG g+W+ ++++ g++R++k+c++rw +yl PON34088.1 14 RGLWTAEEDAKLLAHVSKLGIGNWTMVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	46	1.2e-14	69	110	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T++E++ ++++++ G++ W++Ia+ ++ gRt++++k++w++ PON34088.1 69 TFTPQEEDHIINLHQAIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGRPPCCDKS NVKRGLWTAE EDAKLLAHVS KLGIGNWTMV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDTF TPQEEDHIIN LHQAIGSRWS LIAKQLPGRT DNDVKNYWNT KLRKKLYNMG 120 IDPVTHKPIS QILSEFGNIS GLPNSGCHIM KSEPSSVITE SIPSINMIIS PRIEQVQDLN 180 SLYNGPTQFQ VTNHQDIFNV QPRFFNEVTS SCSSSSSSHV TDLSSPQSSY SCQQSQPQIF 240 APSSSSLLNW SEFFLRDTLD STEVIAEQKQ EDGLQGLLLS ANPGKFANGS DQISSSIMRD 300 EGKFVSFGST NTNGGPMNND QPKNASFVDA ILDRDSELRA EFPDFLDGSF EYY

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGRPPCCDKS NVKRGLWTAE EDAKLLAHVS KLGIGNWTMV PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHDTF TPQEEDHIIN LHQAIGSRWS LIAKQLPGRT DNDVKNYWNT KLRKKLYNMG  120
IDPVTHKPIS QILSEFGNIS GLPNSGCHIM KSEPSSVITE SIPSINMIIS PRIEQVQDLN  180
SLYNGPTQFQ VTNHQDIFNV QPRFFNEVTS SCSSSSSSHV TDLSSPQSSY SCQQSQPQIF  240
APSSSSLLNW SEFFLRDTLD STEVIAEQKQ EDGLQGLLLS ANPGKFANGS DQISSSIMRD  300
EGKFVSFGST NTNGGPMNND QPKNASFVDA ILDRDSELRA EFPDFLDGSF EYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	4e-83	MYB family protein