PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI21395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19589.7 Da PI: 9.8521 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.9 | 3e-14 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+ r+ t+ kR + +lKK +ELS+LC++e++ i++++ MCI21395.1 10 FIVNDVARKATYKKRSKNVLKKVNELSTLCGIEACAIVYGP 50 799************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MARQKVKLAF IVNDVARKAT YKKRSKNVLK KVNELSTLCG IEACAIVYGP YEPEPEIWPS 60 SPRGVQKVVS KFRTKPEFEQ SKKKLSQDDY LKQRIVKGDD QLKKLRKENR ENEMKMLMYE 120 YLKGQIVLDN ISMNDLNDLS WYIDHNLKDI GRILEAGYTD NGQGQIMTA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-51 | M-type_MADS family protein |