PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI00406.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 320aa    MW: 36085.2 Da    PI: 8.584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI00406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021283305123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C+k F++   L  H r+H
  MCI00406.1 283 HECPICNKIFRSGQALGGHKRSH 305
                 79******************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MKFKNLNGGD NSHPPSSSSL HWGNCSSSVS EVEQEQEDVA RCLMMLSRDA TYKGTRFAMV  60
TESSDNNSVV LEAKSKSPSV DTKFAAIKNI VGXXXXXXXX XXXXXXXXXX XXXXXXXXXV  120
SDNSDSGYFT YGPRKVESDD SSDAFFMNDV KSSKAGLISG FEDHDFDSRK KIMSREKRNR  180
NSNEFKKLAL DDSRKRQNLV ESXXXXXXXX XXXXNNDENY ESLKIERESF SEDSAYESDE  240
NSTDSDSYPA PPKTQSNRNI NAKTKKLTSK GKKKMKSKKS KEHECPICNK IFRSGQALGG  300
HKRSHFVGGN IDENTFVIRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-28C2H2 family protein