PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH96400.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 125aa MW: 14196.7 Da PI: 3.9727

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH96400.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.7	8e-19	3	58	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + ++lpe++r da++s+vyeA ar+rdPvyG++g+i +lq+q+++l+a+la+ ++e MCH96400.1 3 FFQELPESQRADAVNSMVYEASARIRDPVYGCAGTICHLQKQVNELQAQLAKSQAE 58 6799***********************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence
SPFFQELPES QRADAVNSMV YEASARIRDP VYGCAGTICH LQKQVNELQA QLAKSQAELI 60 NMQLQQSNLL SLICMEMKET PNESSPQESV DNFISSPNYS SDYQNNLNFF EENTSPNSLW 120 EPLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	6e-34	LBD family protein