PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT2G28500.1 | ||||||||
Common Name | ASL7, LBD11, T17D12.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25534.8 Da PI: 4.6424 | ||||||||
Description | LOB domain-containing protein 11 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137 | 7e-43 | 55 | 154 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ AT2G28500.1 55 PCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQ 152 7**********************************************************************************************998 PP DUF260 99 ee 100 e AT2G28500.1 153 VE 154 65 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.228 | 54 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-42 | 55 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MLKMEINGGV ATPTASAVAK VTETTTPVNS PSPTSSPPPP PSPQQPPQPP VVLSPCAACK 60 ILRRRCADKC VLAPYFPPTD PAKFTIAHRV FGASNIIKFL QELPESQRTD AVNSMVYEAG 120 ARMRDPVYGC AGAIYHLQRQ VSELQAQLAK TQVELVGMQL QRSSLLELIY NMEQTKLSVQ 180 EQGQQKMSFE SSFESGDEFI SSPDEESNDL GFLEDNNNNN NSSMSWWDPL WT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-40 | 47 | 156 | 3 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-40 | 47 | 156 | 3 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.50670 | 1e-172 | floral meristem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | AT2G28500 | |||||
AtGenExpress | AT2G28500 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT2G28500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT2G28500 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB473840 | 0.0 | AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_180417.2 | 1e-173 | LOB domain-containing protein 11 | ||||
Swissprot | Q9SK08 | 1e-174 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | R0FXT9 | 1e-134 | R0FXT9_9BRAS; Uncharacterized protein | ||||
STRING | AT2G28500.1 | 1e-172 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 | Representative plant | OGRP60 | 16 | 318 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT2G28500.1 |
Entrez Gene | 817398 |
iHOP | AT2G28500 |
wikigenes | AT2G28500 |