PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH86064.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 298aa    MW: 33636.3 Da    PI: 6.5985
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH86064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.2e-193931198
                HHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 11 lksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                ++ g +++p k+a+ +        +++   +++l+++d++g++We+++ yr++++r+++t +W++Fv++++L  gD+++F+  ++s +e +v+++r
  MCH86064.1  3 NNGGAFSVPSKCAKLIfppldleaKLP---TQELSITDLHGNVWEFRHVYRGNPKRHMFTHNWSQFVDQKKLVGGDSLIFM--KNSAGEIYVRIHR 93
                556778999999977799998753333...358************************************************..779**9***9988 PP
2Auxin_resp50.49.8e-18113186175
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWp 75 
                 a++ a+++++FevvY+P a+  +Fvv ++ ve+a+k+++  GmR+k +++++dss   + Gt++ + + ++  W+
  MCH86064.1 113 AVKLAEKNEAFEVVYYPTAG-DNFVVDAKVVEDAMKINWNCGMRVKRSLNNDDSSISLQHGTITNLCAPSNRPWH 186
                 678999************95.69**********************************9*******9996666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
DANNGGAFSV PSKCAKLIFP PLDLEAKLPT QELSITDLHG NVWEFRHVYR GNPKRHMFTH  60
NWSQFVDQKK LVGGDSLIFM KNSAGEIYVR IHRVKKFATP AVLQKNELVV MEAVKLAEKN  120
EAFEVVYYPT AGDNFVVDAK VVEDAMKINW NCGMRVKRSL NNDDSSISLQ HGTITNLCAP  180
SNRPWHMLQV KWDEGKVSEN TIQVNPWQIE YNFVVPTLHL QCPPTKKLKV AEDSALLSDI  240
QGDSSIPMIE FQHSAMEKFV DANNCDTKNV TRSFKLFGTI IQVGNDLPNS EIKEDDSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.15e-59ARF family protein