PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MCH80950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 66aa MW: 7829.93 Da PI: 4.6657 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 29.4 | 2.3e-09 | 2 | 47 | 55 | 100 |
DUF260 55 edamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++a++slvye ear+r+P +G + ++++l++ l+++++e++ +k+e MCH80950.1 2 RKAVDSLVYEVEARLRNPTNGFLDFVHNLENWLKEVQQEIDNVKSE 47 5799************************************999987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 66 aa Download sequence |
MRKAVDSLVY EVEARLRNPT NGFLDFVHNL ENWLKEVQQE IDNVKSELTK YLNLEVIQFV 60 MNNLGY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66870.1 | 6e-10 | LBD family protein |