PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH79858.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 873aa MW: 97539.6 Da PI: 6.1274

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH79858.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.7	2.5e-15	61	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YAk+vGF ++ + ++sk ng+ + r+fvC +eg +++ ++ gC+a++k++++ ++kw+vtk+++eH+H+l+ MCH79858.1 61 FYDDYAKHVGFISKVGSRSSSKANGQDMYREFVCEREGLNKRFND--------------GCNAMIKIELKGHNKWVVTKFVKEHSHSLM 135 9************************************988543..............7*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MDVHVINVEE ESDHQAADDR DTEPSDSEIN NAESSGFYVE EGISEPYLGM EFDSEDAAKA 60 FYDDYAKHVG FISKVGSRSS SKANGQDMYR EFVCEREGLN KRFNDGCNAM IKIELKGHNK 120 WVVTKFVKEH SHSLMSSSET QNLHPRKHFS SVGRTMPETY QGIGLVPSGV MYVSMDGNHI 180 SNQNTSAVLN IHASTAADPS RPVKNATLVN YTARPPSQNR TLGKDAHILL EYFKKMQGEN 240 PGFFYAIQLD EDNHMSNVFW ADARSRTAYS HFGDAIHLDT TCRVNQYSVP FAPFTGVNNH 300 GQLVLFGCAL LFDDSEASFL WLFKTFLTAM NERQPVSIIT DQDIAIQAAV SQVFPQARHC 360 INKWHVLREG QEKLAHVCLA HPNFQGELYN CINRTETIEE FESSWNSILD KYELRRNDWL 420 QSLYNARAQW VPAYFHDSFF AAISPNQGFG GSFFEGYVNQ QMTLPLFFRQ YERALESWIE 480 KEIEADFETI CTTPVLKTPS PMEKQAANLY TRKVFLKFQD ELVETFVYTA NIIEGDDVNS 540 TFKVAKFEDV HKAYTVSFNH AELRANCSCQ MFEYSGILCR HILTVFTMTN VLTLPSHYIL 600 KRWTKNAKGS AGSDECAGEL HGQESLTSRY SNLCREAIRY AEEGAVTVET YNVAVTGLKE 660 GGKKVTAMKK SVAKATPPNS QASGTNNNKK TTTSSTLDLT PLLWPRQDEI TGRFNLNDSG 720 GPVQSVADLN LPRMTPVSLH RDGGPSGNMV VLPCLKAMTW VMENKNSSLG NKVAVINLKL 780 QDNSRNPSTE FEVKFQLSRV SLEPMLKSMA SISEQLSRPA NKVAVINLNN LGWTPYSTRT 840 KSACNVMEVV GLTSDAAMAG LCRDGGGGFG DEG

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MDVHVINVEE ESDHQAADDR DTEPSDSEIN NAESSGFYVE EGISEPYLGM EFDSEDAAKA  60
FYDDYAKHVG FISKVGSRSS SKANGQDMYR EFVCEREGLN KRFNDGCNAM IKIELKGHNK  120
WVVTKFVKEH SHSLMSSSET QNLHPRKHFS SVGRTMPETY QGIGLVPSGV MYVSMDGNHI  180
SNQNTSAVLN IHASTAADPS RPVKNATLVN YTARPPSQNR TLGKDAHILL EYFKKMQGEN  240
PGFFYAIQLD EDNHMSNVFW ADARSRTAYS HFGDAIHLDT TCRVNQYSVP FAPFTGVNNH  300
GQLVLFGCAL LFDDSEASFL WLFKTFLTAM NERQPVSIIT DQDIAIQAAV SQVFPQARHC  360
INKWHVLREG QEKLAHVCLA HPNFQGELYN CINRTETIEE FESSWNSILD KYELRRNDWL  420
QSLYNARAQW VPAYFHDSFF AAISPNQGFG GSFFEGYVNQ QMTLPLFFRQ YERALESWIE  480
KEIEADFETI CTTPVLKTPS PMEKQAANLY TRKVFLKFQD ELVETFVYTA NIIEGDDVNS  540
TFKVAKFEDV HKAYTVSFNH AELRANCSCQ MFEYSGILCR HILTVFTMTN VLTLPSHYIL  600
KRWTKNAKGS AGSDECAGEL HGQESLTSRY SNLCREAIRY AEEGAVTVET YNVAVTGLKE  660
GGKKVTAMKK SVAKATPPNS QASGTNNNKK TTTSSTLDLT PLLWPRQDEI TGRFNLNDSG  720
GPVQSVADLN LPRMTPVSLH RDGGPSGNMV VLPCLKAMTW VMENKNSSLG NKVAVINLKL  780
QDNSRNPSTE FEVKFQLSRV SLEPMLKSMA SISEQLSRPA NKVAVINLNN LGWTPYSTRT  840
KSACNVMEVV GLTSDAAMAG LCRDGGGGFG DEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein