PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G27110.2 | ||||||||
Common Name | FRS3, T20P8.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | FAR1 | ||||||||
Protein Properties | Length: 851aa MW: 96257.5 Da PI: 6.3514 | ||||||||
Description | FAR1-related sequence 3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.6 | 2e-13 | 63 | 136 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eY++++GF+ + +++g++ r+fvCs + kr++++ + +C+a+++++++ ++kw+vtk+++eH+H la AT2G27110.2 63 SFYDEYSRQLGFTSKLLP----RTDGSVSVREFVCSSSSKRSKRRLS------------ESCDAMVRIELQGHEKWVVTKFVKEHTHGLA 136 5***********988875....56899************99998877............89**************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.0E-8 | 63 | 136 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-22 | 247 | 338 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.608 | 525 | 561 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-9 | 530 | 559 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.5E-8 | 536 | 563 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MDVHLVEENV SMGNHEIGDE GDVEPSDCSG QNNMDNSLGV QDEIGIAEPC VGMEFNSEKE 60 AKSFYDEYSR QLGFTSKLLP RTDGSVSVRE FVCSSSSKRS KRRLSESCDA MVRIELQGHE 120 KWVVTKFVKE HTHGLASSNM LHCLRPRRHF ANSEKSSYQE GVNVPSGMMY VSMDANSRGA 180 RNASMATNTK RTIGRDAHNL LEYFKRMQAE NPGFFYAVQL DEDNQMSNVF WADSRSRVAY 240 THFGDTVTLD TRYRCNQFRV PFAPFTGVNH HGQAILFGCA LILDESDTSF IWLFKTFLTA 300 MRDQPPVSLV TDQDRAIQIA AGQVFPGARH CINKWDVLRE GQEKLAHVCL AYPSFQVELY 360 NCINFTETIE EFESSWSSVI DKYDLGRHEW LNSLYNARAQ WVPVYFRDSF FAAVFPSQGY 420 SGSFFDGYVN QQTTLPMFFR LYERAMESWF EMEIEADLDT VNTPPVLKTP SPMENQAANL 480 FTRKIFGKFQ EELVETFAHT ANRIEDDGTT STFRVANFEN DNKAYIVTFC YPEMRANCSC 540 QMFEHSGILC RHVLTVFTVT NILTLPPHYI LRRWTRNAKS MVELDEHVSE NGHDSSIHRY 600 NHLCREAIKY AEEGAITAEA YNIALGQLRE GGKKVSVVRK RIGRAAPPSS HGGGIGSGDK 660 TSLSAADTTP LLWPRQDEMI RRFNLNDGGA RAQSVSDLNL PRMAPVSLHR DDTAPENMVA 720 LPCLKSLTWG MESKNTMPGG RVAVINLKLH DYRKFPSADM DVKFQLSSVT LEPMLRSMAY 780 ISEQLSSPAN RVAVINLKLQ DTETTTGESE VKFQVSRDTL GAMLRSMAYI REQLSIVGEL 840 QTESQAKKQR K |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.22269 | 0.0 | vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 266318_at | 0.0 | ||||
Expression Atlas | AT2G27110 | - | ||||
AtGenExpress | AT2G27110 | - | ||||
ATTED-II | AT2G27110 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G27110.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G51600 | |||||
IntAct | Search Q9ZVC9 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G27110 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057491 | 0.0 | AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds. | |||
GenBank | BT002690 | 0.0 | BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565636.1 | 0.0 | FAR1-related sequence 3 | ||||
Refseq | NP_850098.1 | 0.0 | FAR1-related sequence 3 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A178W1D9 | 0.0 | A0A178W1D9_ARATH; FRS3 | ||||
STRING | AT2G27110.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G27110.2 |
Entrez Gene | 817253 |
iHOP | AT2G27110 |
wikigenes | AT2G27110 |