PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG050660.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1074aa MW: 120079 Da PI: 6.5812

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG050660.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.2	6.5e-23	71	172	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + TRIDC7BG050660.7 71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--R 159 99***************************954.4444.48********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ TRIDC7BG050660.7 160 DERQQLLLGIRRA 172 577788*9997 PP
2	Auxin_resp	117.9	8.6e-39	197	280	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g++dldpvrW+nS+Wr+L+ TRIDC7BG050660.7 197 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 280 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1074 aa Download sequence
MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAQ MTLQPVTSYG KEALQLSELA 60 LKQARPQNEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDNV 120 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS 180 SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM 240 RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI 300 EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL 360 SLVQWMNMNM QQSSSFANTA MQSEYLRSIT NPSMQNIGSG DLSRQLCLQN QLLQQNNMQF 420 NTPKLPHQMQ PNNELSKAAL PLNQNGASIK PEEQTQDASN FQRQQQSMNY ALPLSQAQTS 480 LAQAQVLIQS QMQQQQQQQQ QPHIPQNQLP TANQQQQQQK FLQQQQLLLQ QQQLQQHQHQ 540 LQQQQQQQLS KMPAQLPNMS NQQLQLSDQQ LQLQLLQKLQ QQQQSLLSQP GVTLAQLPLI 600 QEQQKLLMDM QQQLSSSHSL SQQQMMPQQS TKIPSHAASL PPPMQPDTTH QKLPQKQALP 660 ADTLEAAIPT TTSLKFSSAN GSPLRMPGAT HSVVTEEIPS CSTSPSTANG NHLLQPVPGR 720 DQYPSMINTE KAPHSTAPMS VPSSLDAVTG AQRMTKELPK LNSNVKQNMM PSKLPNGGAG 780 PQNFANNAPP TDYLETASSA TSVWLSQADG LLHPNFPMSN FSQQQLFKDA PPDTEIPAEI 840 PSNNALFGIS NDGHVGFPMV TDDFLTNGID AVKYENHIST DIDNNYRIPK DAQQEISSSM 900 VSQSFGASDM AFNSIDSGIN NGAFLNKSSW PPAPPVKRMR TFTKVYKRGA VGRSIDISQY 960 AGYEELKHAL ARMFSIEGQL EERQRIGWKL VYRDHEDDIL LLGDDPWEEF VNCVKCIRIL 1020 SPQEVQQMSL DGDLGSSVVP NQACSSSEGG GNAWRARCDQ NSGNPSTGSY DQFE

Sequence ? help Back to Top

Protein Sequence Length: 1074 aa Download sequence

MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAQ MTLQPVTSYG KEALQLSELA  60
LKQARPQNEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDNV  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM  240
RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI  300
EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL  360
SLVQWMNMNM QQSSSFANTA MQSEYLRSIT NPSMQNIGSG DLSRQLCLQN QLLQQNNMQF  420
NTPKLPHQMQ PNNELSKAAL PLNQNGASIK PEEQTQDASN FQRQQQSMNY ALPLSQAQTS  480
LAQAQVLIQS QMQQQQQQQQ QPHIPQNQLP TANQQQQQQK FLQQQQLLLQ QQQLQQHQHQ  540
LQQQQQQQLS KMPAQLPNMS NQQLQLSDQQ LQLQLLQKLQ QQQQSLLSQP GVTLAQLPLI  600
QEQQKLLMDM QQQLSSSHSL SQQQMMPQQS TKIPSHAASL PPPMQPDTTH QKLPQKQALP  660
ADTLEAAIPT TTSLKFSSAN GSPLRMPGAT HSVVTEEIPS CSTSPSTANG NHLLQPVPGR  720
DQYPSMINTE KAPHSTAPMS VPSSLDAVTG AQRMTKELPK LNSNVKQNMM PSKLPNGGAG  780
PQNFANNAPP TDYLETASSA TSVWLSQADG LLHPNFPMSN FSQQQLFKDA PPDTEIPAEI  840
PSNNALFGIS NDGHVGFPMV TDDFLTNGID AVKYENHIST DIDNNYRIPK DAQQEISSSM  900
VSQSFGASDM AFNSIDSGIN NGAFLNKSSW PPAPPVKRMR TFTKVYKRGA VGRSIDISQY  960
AGYEELKHAL ARMFSIEGQL EERQRIGWKL VYRDHEDDIL LLGDDPWEEF VNCVKCIRIL  1020
SPQEVQQMSL DGDLGSSVVP NQACSSSEGG GNAWRARCDQ NSGNPSTGSY DQFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-176	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG050660.7