PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG050660.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1076aa MW: 120358 Da PI: 6.6785

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG050660.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.2	6.5e-23	71	172	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + TRIDC7BG050660.6 71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--R 159 99***************************954.4444.48********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ TRIDC7BG050660.6 160 DERQQLLLGIRRA 172 577788*9997 PP
2	Auxin_resp	117.9	8.6e-39	197	280	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g++dldpvrW+nS+Wr+L+ TRIDC7BG050660.6 197 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 280 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1076 aa Download sequence
MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAQ MTLQPVTSYG KEALQLSELA 60 LKQARPQNEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDNV 120 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS 180 SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM 240 RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI 300 EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL 360 SLVQWMNMNM QQSSSFANTA MQSEYLRSIT NPSMQNIGSG DLSRQLCLQN QLLQQNNMQF 420 NTPKLPHQMQ PNNELSKAAL PLNQNGASIK PEEQTQDASN FQRQQQSMNY ALPLSQAQTS 480 LAQAQVLIQS QMQQQQQQQQ QPHIPQNQLP TAKQHQQQQQ QKFLQQQQLL LQQQQLQQHQ 540 HQLQQQQQQQ LSKMPAQLPN MSNQQLQLSD QQLQLQLLQK LQQQQQSLLS QPGVTLAQLP 600 LIQEQQKLLM DMQQQLSSSH SLSQQQMMPQ QSTKIPSHAA SLPPPMQPDT THQKLPQKQA 660 LPADTLEAAI PTTTSLKFSS ANGSPLRMPG ATHSVVTEEI PSCSTSPSTA NGNHLLQPVP 720 GRDQYPSMIN TEKAPHSTAP MSVPSSLDAV TGAQRMTKEL PKLNSNVKQN MMPSKLPNGG 780 AGPQNFANNA PPTDYLETAS SATSVWLSQA DGLLHPNFPM SNFSQQQLFK DAPPDTEIPA 840 EIPSNNALFG ISNDGHVGFP MVTDDFLTNG IDAVKYENHI STDIDNNYRI PKDAQQEISS 900 SMVSQSFGAS DMAFNSIDSG INNGAFLNKS SWPPAPPVKR MRTFTKVYKR GAVGRSIDIS 960 QYAGYEELKH ALARMFSIEG QLEERQRIGW KLVYRDHEDD ILLLGDDPWE EFVNCVKCIR 1020 ILSPQEVQQM SLDGDLGSSV VPNQACSSSE GGGNAWRARC DQNSGNPSTG SYDQFE

Sequence ? help Back to Top

Protein Sequence Length: 1076 aa Download sequence

MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAQ MTLQPVTSYG KEALQLSELA  60
LKQARPQNEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDNV  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM  240
RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI  300
EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL  360
SLVQWMNMNM QQSSSFANTA MQSEYLRSIT NPSMQNIGSG DLSRQLCLQN QLLQQNNMQF  420
NTPKLPHQMQ PNNELSKAAL PLNQNGASIK PEEQTQDASN FQRQQQSMNY ALPLSQAQTS  480
LAQAQVLIQS QMQQQQQQQQ QPHIPQNQLP TAKQHQQQQQ QKFLQQQQLL LQQQQLQQHQ  540
HQLQQQQQQQ LSKMPAQLPN MSNQQLQLSD QQLQLQLLQK LQQQQQSLLS QPGVTLAQLP  600
LIQEQQKLLM DMQQQLSSSH SLSQQQMMPQ QSTKIPSHAA SLPPPMQPDT THQKLPQKQA  660
LPADTLEAAI PTTTSLKFSS ANGSPLRMPG ATHSVVTEEI PSCSTSPSTA NGNHLLQPVP  720
GRDQYPSMIN TEKAPHSTAP MSVPSSLDAV TGAQRMTKEL PKLNSNVKQN MMPSKLPNGG  780
AGPQNFANNA PPTDYLETAS SATSVWLSQA DGLLHPNFPM SNFSQQQLFK DAPPDTEIPA  840
EIPSNNALFG ISNDGHVGFP MVTDDFLTNG IDAVKYENHI STDIDNNYRI PKDAQQEISS  900
SMVSQSFGAS DMAFNSIDSG INNGAFLNKS SWPPAPPVKR MRTFTKVYKR GAVGRSIDIS  960
QYAGYEELKH ALARMFSIEG QLEERQRIGW KLVYRDHEDD ILLLGDDPWE EFVNCVKCIR  1020
ILSPQEVQQM SLDGDLGSSV VPNQACSSSE GGGNAWRARC DQNSGNPSTG SYDQFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-176	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG050660.6