PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7BG050660.11
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 303aa    MW: 34194.9 Da    PI: 9.4906
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7BG050660.11genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18.3e-2489190199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  TRIDC7BG050660.11  89 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV-- 176
                        99*****************************954.4444.48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++l+++++r+
  TRIDC7BG050660.11 177 RDERQQLLLGIRRA 190
                        4577888***9997 PP
2Auxin_resp120.51.3e-39215298183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g++dldpvrW+nS+Wr+L+
  TRIDC7BG050660.11 215 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 298
                        79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
GSLIVYFPQG HSEQVAASMQ KDVDAHVPNY PNLPSKLICL LHNITLHADL ETDEVYAQMT  60
LQPVTSYGKE ALQLSELALK QARPQNEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDF  120
SMQPPAQEIQ ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVIFVRDER  180
QQLLLGIRRA NRQPTNISSS VLSSDSMHIG ILAAAAHAAA NNSPFTIFYN PRASPTEFVI  240
PFAKYQKAVY GNQLSLGMRF RMMFETEELG TRRYMGTITG INDLDPVRWK NSQWRNLQTG  300
WLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-166ARF family protein