PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG030660.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 364aa MW: 38771.8 Da PI: 7.2988

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG030660.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31	4.3e-10	102	127	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ TRIDC7BG030660.2 102 FKTKLCCKFRA-GTCPYVTNCNFAHGM 127 69*******.***********95 PP
2	zf-CCCH	18.2	4.6e-06	175	200	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ TRIDC7BG030660.2 175 YKGRHCKKFYTEEGCPYGDACTFLHD 200 78888********************7 PP
3	zf-CCCH	43.4	5.8e-14	243	268	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg TRIDC7BG030660.2 243 WKTRICNKWEMTGYCPFGSKCHFAHG 268 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MDYTNAIHII PDAAGPESWA NSAAPPGGDS GIWATEDDYS QWNGDQGLSG GGYGGDRNSL 60 QPHSRAGSEQ PPPGKKPRGS GPSGGGDAGS TSKSRAIGKM FFKTKLCCKF RAGTCPYVTN 120 CNFAHGMEEL RKPPPNWQEI VAAHEEATEQ REEHQIPIMT SSNVVPGDSV SGRAYKGRHC 180 KKFYTEEGCP YGDACTFLHD EQSKARESVA ISLSPSVGGG SYNSATAAAA SPNGPTILKP 240 SNWKTRICNK WEMTGYCPFG SKCHFAHGAA ELHKYGGGLV DIDGRDIAST PDSKQAAASS 300 KLPVETAAAS TAVPPHADVY HLGSQSQRSA LASQRSGQLQ RPIQKWKGPD KISRIYGDWI 360 DETD

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MDYTNAIHII PDAAGPESWA NSAAPPGGDS GIWATEDDYS QWNGDQGLSG GGYGGDRNSL  60
QPHSRAGSEQ PPPGKKPRGS GPSGGGDAGS TSKSRAIGKM FFKTKLCCKF RAGTCPYVTN  120
CNFAHGMEEL RKPPPNWQEI VAAHEEATEQ REEHQIPIMT SSNVVPGDSV SGRAYKGRHC  180
KKFYTEEGCP YGDACTFLHD EQSKARESVA ISLSPSVGGG SYNSATAAAA SPNGPTILKP  240
SNWKTRICNK WEMTGYCPFG SKCHFAHGAA ELHKYGGGLV DIDGRDIAST PDSKQAAASS  300
KLPVETAAAS TAVPPHADVY HLGSQSQRSA LASQRSGQLQ RPIQKWKGPD KISRIYGDWI  360
DETD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-108	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG030660.2