PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG021980.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1066aa MW: 118742 Da PI: 6.6212

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG021980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.9	1.2e-20	102	203	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ W++++i+r++++r++lt+GW+ F + ++L +gD+v+F ++ TRIDC7BG021980.1 102 FCKTLTASDTSTHGGFSVPRRAAERIfprldfSLQPPA-QELQARDLHDTIWTFRHIFRGQPRRHLLTTGWSLFISGKRLLAGDSVLFI--RD 191 99***************************9777665.49**********************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++l+++++r+ TRIDC7BG021980.1 192 AKQQLLLGIRRA 203 677789999997 PP
2	Auxin_resp	118.4	5.9e-39	228	311	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++ TRIDC7BG021980.1 228 AAHAAANNSQFTIFYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNIQ 311 79********************************9******************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1066 aa Download sequence
AGPLVALPPP GSLVVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHSVTMQSDP 60 DTDEVYARMT LQPVSNVTQC DKEILLASEL ALKQNKPQTE FFCKTLTASD TSTHGGFSVP 120 RRAAERIFPR LDFSLQPPAQ ELQARDLHDT IWTFRHIFRG QPRRHLLTTG WSLFISGKRL 180 LAGDSVLFIR DAKQQLLLGI RRANRQPTNL SSSVLSSDSM HIGVLAAAAH AAANNSQFTI 240 FYNPRASPSE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV 300 RWKNSQWRNI QVAWDEAAPS ERRTRVSLWD IEPVIAPFFI YPTPLFTAKR ARQPGMIDDD 360 TSGMDNLFKR TMPWLGEEIC KKDMNTQNSI VPGLNLAQSL QWMNMQQNLS LAGTVMQPEL 420 LNSLAGKHVQ NLSAADISRQ ISFQPQFLQQ NNIQFNTSLL PQQNQQAEQL AKAIGTPNQL 480 GNIMVPQKVD QDCNSDQKQH TVTQSVQGSQ ANLNVTQPEH VVQAQFQQPR VILQAQLQQQ 540 QPLVQSHTVF QGGLQQIQVL QQQQPHLQQQ LQQQQPQHHQ QVQHSVQEQQ QMKIQPVHVS 600 SDVNMNTQLS DHQMKLQLLK ALHSQQHLTT EQQKMLFDLQ QQVVNSQSDP QQCVQGATQT 660 VGFHNRNTIQ YATQQKAQSH QPVDDSPRGT IPVAKSDVVT SMGASSLNVA GRMQSVRTDN 720 VPSSSTSPSP STATNHVLLQ SIPSSSKNQS LPTAAKTSQS SVVLGPTIEQ EMKSYQSVKP 780 TIMIPKMIEQ GPATERDYIN NPHMDYLDTS SSATSVCLSQ ADGSLQQNFP SSSFDQHQLL 840 RDTAPDSEFE ISDPTNNLLF GVNIDGQLGL PLNADALLAN SIENDKFMDE MAGNGISNYI 900 SSKDSQQELS SSMISHSLGV ADMGFNSIDS AINDPSFLNR NSRAPAPAHQ RMRTYTKVHK 960 RGAVGRSIDM NRYSGYDELK HDIARMFGIE GQLGDQSRVG WKLVYEDHEK DVLLVGDDPW 1020 EDFLNCVRCI RILSPQEEMQ MRLVGDFGDG FLPNQACSSS DGGQPW

Sequence ? help Back to Top

Protein Sequence Length: 1066 aa Download sequence

AGPLVALPPP GSLVVYFPQG HSEQVAASMR KDADAQIPSY PNLPSKLICI LHSVTMQSDP  60
DTDEVYARMT LQPVSNVTQC DKEILLASEL ALKQNKPQTE FFCKTLTASD TSTHGGFSVP  120
RRAAERIFPR LDFSLQPPAQ ELQARDLHDT IWTFRHIFRG QPRRHLLTTG WSLFISGKRL  180
LAGDSVLFIR DAKQQLLLGI RRANRQPTNL SSSVLSSDSM HIGVLAAAAH AAANNSQFTI  240
FYNPRASPSE FVIPFAKYQK AVYGNQLSLG MRFRMMFETE ESGTRRYMGT ITGISDLDPV  300
RWKNSQWRNI QVAWDEAAPS ERRTRVSLWD IEPVIAPFFI YPTPLFTAKR ARQPGMIDDD  360
TSGMDNLFKR TMPWLGEEIC KKDMNTQNSI VPGLNLAQSL QWMNMQQNLS LAGTVMQPEL  420
LNSLAGKHVQ NLSAADISRQ ISFQPQFLQQ NNIQFNTSLL PQQNQQAEQL AKAIGTPNQL  480
GNIMVPQKVD QDCNSDQKQH TVTQSVQGSQ ANLNVTQPEH VVQAQFQQPR VILQAQLQQQ  540
QPLVQSHTVF QGGLQQIQVL QQQQPHLQQQ LQQQQPQHHQ QVQHSVQEQQ QMKIQPVHVS  600
SDVNMNTQLS DHQMKLQLLK ALHSQQHLTT EQQKMLFDLQ QQVVNSQSDP QQCVQGATQT  660
VGFHNRNTIQ YATQQKAQSH QPVDDSPRGT IPVAKSDVVT SMGASSLNVA GRMQSVRTDN  720
VPSSSTSPSP STATNHVLLQ SIPSSSKNQS LPTAAKTSQS SVVLGPTIEQ EMKSYQSVKP  780
TIMIPKMIEQ GPATERDYIN NPHMDYLDTS SSATSVCLSQ ADGSLQQNFP SSSFDQHQLL  840
RDTAPDSEFE ISDPTNNLLF GVNIDGQLGL PLNADALLAN SIENDKFMDE MAGNGISNYI  900
SSKDSQQELS SSMISHSLGV ADMGFNSIDS AINDPSFLNR NSRAPAPAHQ RMRTYTKVHK  960
RGAVGRSIDM NRYSGYDELK HDIARMFGIE GQLGDQSRVG WKLVYEDHEK DVLLVGDDPW  1020
EDFLNCVRCI RILSPQEEMQ MRLVGDFGDG FLPNQACSSS DGGQPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG021980.1