PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7BG009870.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1101aa MW: 122213 Da PI: 7.0743

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7BG009870.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.2	2.8e-22	163	264	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F + TRIDC7BG009870.4 163 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELMAKDLHDIPWKFRHIFRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--R 251 99***************************96555544..8**********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ TRIDC7BG009870.4 252 DEKSQLLLGIRRA 264 5677789999997 PP
2	Auxin_resp	122.8	2.4e-40	289	371	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldpvrW+nS+Wr+L+ TRIDC7BG009870.4 289 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 371 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1101 aa Download sequence
CALRATGQLI KRRTSDKGRR IFGYPEARFG SGSRRDEGPG IGRRLARPAG GGEEGHQLGA 60 VACLFRASGG DAAGGQPCRL LPTGPQRAEV AASMHKEVDI IPNYPSLPSK LICKLLSLTL 120 HADSETDEVY AQMTLQPVNK YDRDAMLASE LGLKQNKQPV EFFCKTLTAS DTSTHGGFSV 180 PRRAAEKIFP PLDFTMQPPA QELMAKDLHD IPWKFRHIFR GQPKRHLLTT GWSVFVSTKR 240 LLAGDSVLFI RDEKSQLLLG IRRATRPQPA LSSSVLSSDS MHIGILAAAA HAAANSSPFT 300 IFYNPRASPS EFVIPLAKYN KALYTQVSLG MRFRMLFETE DSGVRRYMGT ITGIGDLDPV 360 RWKNSHWRNL QVGWDESTAS ERRTRVSIWE IEPVATPFYI CPPPFFRPKL PKQPGMPDDE 420 SEVDSAFKRA MPWLGDDFAL KDVQSQLFPG LSLVQWMAMQ QNPQMLPAGA PAVQAPYLNS 480 SAMAMQDGMG TGNDDLMRRF NMQGQNIGLS NSQVGSKMDH PAMAQHQQQS HQLQQQQQVQ 540 QSQQSSAVQQ QQAQLLQQNA IHLQQQQEHL QRQQSLPQQQ QEHLQRQQSQ PQQQLKTAAS 600 MPSMEQHKLR EQQPQGGQAV SQAQMLSQIF QPSSSQLQQL GLPKSPTQRP GFPGLPTACS 660 LQQPALGQAP QVQQAAEYQQ ALLQSQQQQL QQLSQPEMQL QLLQKIQQQN MLSQLNPQHQ 720 SQLMQQLSQK NQEYLQQQIL QHQLSGSDAM VQFKQSHQTP SNNITGSLTP QQLARSHSAL 780 AESEDPSSST APSANRLSPM NSLSRTHQGS RNLTDMTTSP HIDNLLQEIQ SKPDNRNKND 840 TQSSKETIPV PNRYPVSDQL DASSATSFCL DESPREGFSF PPVCLDSNAQ VDPRDNFLIA 900 ENVDSLMPDA LLSRGMGSGK DICNLPSGQR DHREVDNELS SAAFSSQSFG VPDMSFKPGC 960 SGDIAVNDGG MPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI DITRYTNYDE LRHDLACMFG 1020 IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVSCVK SIKILSSVEV QQMSLDGDLG 1080 GIPSQTQACS ASDDANAWRG S

Sequence ? help Back to Top

Protein Sequence Length: 1101 aa Download sequence

CALRATGQLI KRRTSDKGRR IFGYPEARFG SGSRRDEGPG IGRRLARPAG GGEEGHQLGA  60
VACLFRASGG DAAGGQPCRL LPTGPQRAEV AASMHKEVDI IPNYPSLPSK LICKLLSLTL  120
HADSETDEVY AQMTLQPVNK YDRDAMLASE LGLKQNKQPV EFFCKTLTAS DTSTHGGFSV  180
PRRAAEKIFP PLDFTMQPPA QELMAKDLHD IPWKFRHIFR GQPKRHLLTT GWSVFVSTKR  240
LLAGDSVLFI RDEKSQLLLG IRRATRPQPA LSSSVLSSDS MHIGILAAAA HAAANSSPFT  300
IFYNPRASPS EFVIPLAKYN KALYTQVSLG MRFRMLFETE DSGVRRYMGT ITGIGDLDPV  360
RWKNSHWRNL QVGWDESTAS ERRTRVSIWE IEPVATPFYI CPPPFFRPKL PKQPGMPDDE  420
SEVDSAFKRA MPWLGDDFAL KDVQSQLFPG LSLVQWMAMQ QNPQMLPAGA PAVQAPYLNS  480
SAMAMQDGMG TGNDDLMRRF NMQGQNIGLS NSQVGSKMDH PAMAQHQQQS HQLQQQQQVQ  540
QSQQSSAVQQ QQAQLLQQNA IHLQQQQEHL QRQQSLPQQQ QEHLQRQQSQ PQQQLKTAAS  600
MPSMEQHKLR EQQPQGGQAV SQAQMLSQIF QPSSSQLQQL GLPKSPTQRP GFPGLPTACS  660
LQQPALGQAP QVQQAAEYQQ ALLQSQQQQL QQLSQPEMQL QLLQKIQQQN MLSQLNPQHQ  720
SQLMQQLSQK NQEYLQQQIL QHQLSGSDAM VQFKQSHQTP SNNITGSLTP QQLARSHSAL  780
AESEDPSSST APSANRLSPM NSLSRTHQGS RNLTDMTTSP HIDNLLQEIQ SKPDNRNKND  840
TQSSKETIPV PNRYPVSDQL DASSATSFCL DESPREGFSF PPVCLDSNAQ VDPRDNFLIA  900
ENVDSLMPDA LLSRGMGSGK DICNLPSGQR DHREVDNELS SAAFSSQSFG VPDMSFKPGC  960
SGDIAVNDGG MPSQGLWNNQ TQRMRTFTKV QKRGSVGRSI DITRYTNYDE LRHDLACMFG  1020
IQGQLEDPYR MDWKLVYVDH ENDILLVGDD PWEEFVSCVK SIKILSSVEV QQMSLDGDLG  1080
GIPSQTQACS ASDDANAWRG S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC7BG009870.4