PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC7BG009870.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1030aa    MW: 114896 Da    PI: 6.4489
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC7BG009870.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.5e-2292193199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++   W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  TRIDC7BG009870.3  92 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELMAKDLHDIPWKFRHIFRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--R 180
                       99*****************************96555544..8************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  TRIDC7BG009870.3 181 DEKSQLLLGIRRA 193
                       5677789999997 PP
2Auxin_resp122.92.2e-40218300183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds  rr++Gt++g+ dldpvrW+nS+Wr+L+
  TRIDC7BG009870.3 218 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 300
                       79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    
MPPVGSLVVY FPQGHSEQVA ASMHKEVDII PNYPSLPSKL ICKLLSLTLH ADSETDEVYA  60
QMTLQPVNKY DRDAMLASEL GLKQNKQPVE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP  120
LDFTMQPPAQ ELMAKDLHDI PWKFRHIFRG QPKRHLLTTG WSVFVSTKRL LAGDSVLFIR  180
DEKSQLLLGI RRATRPQPAL SSSVLSSDSM HIGILAAAAH AAANSSPFTI FYNPRASPSE  240
FVIPLAKYNK ALYTQVSLGM RFRMLFETED SGVRRYMGTI TGIGDLDPVR WKNSHWRNLQ  300
VGWDESTASE RRTRVSIWEI EPVATPFYIC PPPFFRPKLP KQPGMPDDES EVDSAFKRAM  360
PWLGDDFALK DVQSQLFPGL SLVQWMAMQQ NPQMLPAGAP AVQAPYLNSS AMAMQDGMGT  420
GNDDLMRRFN MQGQNIGLSN SQVGSKMDHP AMAQHQQQSH QLQQQQQVQQ SQQSSAVQQQ  480
QAQLLQQNAI HLQQQQEHLQ RQQSLPQQQQ EHLQRQQSQP QQQLKTAASM PSMEQHKLRE  540
QQPQGGQAVS QAQMLSQIFQ PSSSQLQQLG LPKSPTQRPG FPGLPTACSL QQPALGQAPQ  600
VQQAAEYQQA LLQSQQQQLQ QLSQPEMQLQ LLQKIQQQNM LSQLNPQHQS QLMQQLSQKN  660
QEYLQQQILQ HQLSGSDAMV QFKQSHQTPS NNITGSLTPQ QLARSHSALA ESEDPSSSTA  720
PSANRLSPMN SLSRTHQGSR NLTDMTTSPH IDNLLQEIQS KPDNRNKNDT QSSKETIPVP  780
NRYPVSDQLD ASSATSFCLD ESPREGFSFP PVCLDSNAQV DPRDNFLIAE NVDSLMPDAL  840
LSRGMGSGKD ICNLPSGQRD HREVDNELSS AAFSSQSFGV PDMSFKPGCS GDIAVNDGGM  900
PSQGLWNNQT QRMRTFTKVQ KRGSVGRSID ITRYTNYDEL RHDLACMFGI QGQLEDPYRM  960
DWKLVYVDHE NDILLVGDDP WEEFVSCVKS IKILSSVEVQ QMSLDGDLGG IPSQTQACSA  1020
SDDANAWRGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein