PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG058040.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1075aa MW: 120501 Da PI: 6.5705

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG058040.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.2	6.5e-23	71	172	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + TRIDC7AG058040.2 71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--R 159 99***************************954.4444.48********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ TRIDC7AG058040.2 160 DERQQLLLGIRRA 172 577788*9997 PP
2	Auxin_resp	117.9	8.6e-39	197	280	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g++dldpvrW+nS+Wr+L+ TRIDC7AG058040.2 197 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 280 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence
MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAQ MTLQPVTSYG KEALQLSELA 60 LKQARPQNEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDNV 120 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS 180 SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM 240 RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI 300 EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL 360 SLVQWMNMNM QQSSSFANTA MQSEYLRSIT NPSMQNIGSG DLSRQLCLQN QLLQQNNMQF 420 NTPKLPQQMQ PNNELSKAAL PLNQNGASIK PEEQTQDTSN FQRQQQSMNY TLPLSQAQTS 480 LAQAQVLIQS QMQQQQQQQH HHQQHQHQQQ EQQHQQQQQQ KFLQQQQLLL QQQQLQQHQH 540 QLQQQQQQQL GKMPAQLPNL SNQQLQLSDQ QLQLQLLQKL QQQQQSLLSQ PGVTLAQLPL 600 IQEQQKLLMD MQQQLSSSHS LSQQQMMPQQ STKIPSQAAS LPPPMQPDTT HQKLPQKQAL 660 PADTLEAAIP TTTSHKFSSA NGSPLRMPGA THSVVTEEIP SCSTSPSTAN GNHLLQPVPG 720 RDQYSSMINT EKAPHSTAPM SVPSSLDAVT GAQRMTKELP KLNSNVKQNM MPSKLLNGGA 780 GPQNFANNAA PTDYLETASS ATSVWLSQAD GLLHPNFPMT NFSQQQLFKD APPDTEIPAE 840 IPSNNALFGI SNDGHVGFPM VTDDFLTNGI DAVKYENHIS TDIDNNYRIP KDAQQEISSS 900 MVSQSFGASD MAFNSIDSGI NDGAFLNKSS WPPAPPVKRM RTFTKVYKRG AVGRSIDISQ 960 YAGYEELKHA LARMFSIEGQ LEERQRIGWK LVYRDHEDDI LLLGDDPWEE FVNCVKCIRI 1020 LSPQEVQQMS LDGDLGSSVV PNQACSSSEG GGNAWRARCD QNSGNPSTGS YDQFE

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence

MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAQ MTLQPVTSYG KEALQLSELA  60
LKQARPQNEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE IQARDLHDNV  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM  240
RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI  300
EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL  360
SLVQWMNMNM QQSSSFANTA MQSEYLRSIT NPSMQNIGSG DLSRQLCLQN QLLQQNNMQF  420
NTPKLPQQMQ PNNELSKAAL PLNQNGASIK PEEQTQDTSN FQRQQQSMNY TLPLSQAQTS  480
LAQAQVLIQS QMQQQQQQQH HHQQHQHQQQ EQQHQQQQQQ KFLQQQQLLL QQQQLQQHQH  540
QLQQQQQQQL GKMPAQLPNL SNQQLQLSDQ QLQLQLLQKL QQQQQSLLSQ PGVTLAQLPL  600
IQEQQKLLMD MQQQLSSSHS LSQQQMMPQQ STKIPSQAAS LPPPMQPDTT HQKLPQKQAL  660
PADTLEAAIP TTTSHKFSSA NGSPLRMPGA THSVVTEEIP SCSTSPSTAN GNHLLQPVPG  720
RDQYSSMINT EKAPHSTAPM SVPSSLDAVT GAQRMTKELP KLNSNVKQNM MPSKLLNGGA  780
GPQNFANNAA PTDYLETASS ATSVWLSQAD GLLHPNFPMT NFSQQQLFKD APPDTEIPAE  840
IPSNNALFGI SNDGHVGFPM VTDDFLTNGI DAVKYENHIS TDIDNNYRIP KDAQQEISSS  900
MVSQSFGASD MAFNSIDSGI NDGAFLNKSS WPPAPPVKRM RTFTKVYKRG AVGRSIDISQ  960
YAGYEELKHA LARMFSIEGQ LEERQRIGWK LVYRDHEDDI LLLGDDPWEE FVNCVKCIRI  1020
LSPQEVQQMS LDGDLGSSVV PNQACSSSEG GGNAWRARCD QNSGNPSTGS YDQFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-176	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG058040.2