PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC7AG041600.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 363aa MW: 38658.7 Da PI: 7.2868

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC7AG041600.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31	4.3e-10	101	126	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ TRIDC7AG041600.2 101 FKTKLCCKFRA-GTCPYVTNCNFAHGM 126 69*******.***********95 PP
2	zf-CCCH	18.2	4.6e-06	174	199	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ TRIDC7AG041600.2 174 YKGRHCKKFYTEEGCPYGDACTFLHD 199 78888********************7 PP
3	zf-CCCH	43.4	5.8e-14	242	267	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg TRIDC7AG041600.2 242 WKTRICNKWEMTGYCPFGSKCHFAHG 267 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MDYTNAIHII PDAAGPESWA NSAAPPGGDS GIWATEDDYS QWNGDQGSGG CYGGDRNSSQ 60 PHSRAGGEQP PPGKKPRGSG PSGGGDAGST SKSRAIGKMF FKTKLCCKFR AGTCPYVTNC 120 NFAHGMEELR KPPPNWQEIV AAHEEATEQR EEHQIPIMTS SNVVPGDSVS GRAYKGRHCK 180 KFYTEEGCPY GDACTFLHDE QSKARESVAI SLSPSVGGGS YNSAAAAAAS PNGPTILKPS 240 NWKTRICNKW EMTGYCPFGS KCHFAHGAAE LHKYGGGLVD IDGRDIASTP DSKQAAASSK 300 LPVETPAAST AVPPHADVYH LGSQTQRSAL ASQRSGQLQR PIQKWKGPDK ISRIYGDWID 360 ETD

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MDYTNAIHII PDAAGPESWA NSAAPPGGDS GIWATEDDYS QWNGDQGSGG CYGGDRNSSQ  60
PHSRAGGEQP PPGKKPRGSG PSGGGDAGST SKSRAIGKMF FKTKLCCKFR AGTCPYVTNC  120
NFAHGMEELR KPPPNWQEIV AAHEEATEQR EEHQIPIMTS SNVVPGDSVS GRAYKGRHCK  180
KFYTEEGCPY GDACTFLHDE QSKARESVAI SLSPSVGGGS YNSAAAAAAS PNGPTILKPS  240
NWKTRICNKW EMTGYCPFGS KCHFAHGAAE LHKYGGGLVD IDGRDIASTP DSKQAAASSK  300
LPVETPAAST AVPPHADVYH LGSQTQRSAL ASQRSGQLQR PIQKWKGPDK ISRIYGDWID  360
ETD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-112	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC7AG041600.2