PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC7AG019880.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 1065aa MW: 118491 Da PI: 6.361 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.2 | 2.6e-22 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F + TRIDC7AG019880.2 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELMAKDLHDIPWKFRHIFRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--R 215 99*****************************96555544..8************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ TRIDC7AG019880.2 216 DEKSQLLLGIRRA 228 5677789999997 PP | |||||||
2 | Auxin_resp | 122.9 | 2.3e-40 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldpvrW+nS+Wr+L+ TRIDC7AG019880.2 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 335 79*******************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1065 aa Download sequence |
MKDQESAGVS PGPPEGEKKA INSELWHACS GPLVAMPPVG SLVVYFPQGH SEQVAASMHK 60 EVDIIPNYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN 120 KQPVEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELMAK DLHDIPWKFR 180 HIFRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRATR PQPALSSSVL 240 SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML 300 FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWEIEPVAT 360 PFYICPPPFF RPKLPKQPGM PDDEGEVDSA FKRAMPWLGD DFALKDVQSQ LFPGLSLVQW 420 MAMQQNPQML PAGAPAVQAP YLNSSAMAMQ DGMGTGNDDL MRRFNMQSQN ISLPNSQVGS 480 KMDHAAMAQH QQQSHQLQQQ QQVQQSQQSS AVQQQQAQLL QQNAIHLQQQ QEHLQRQQSL 540 PQQQQEHLQR QQSQPQQQLK TAASMPSMEQ HKLREQQPQG GQAVSQAQML SQIFQPSSSQ 600 LQQLGLPKSP TQRPGFPGLP TASSLQQPAL GQAPQVQQAA EYQQALLQSQ QQQLQQLSQP 660 EMQLQLLQKI QQQNMLSQLN PQHQSQLMQQ LSQKNQEYLQ QQILQHQLSG SDAMVQFKQS 720 HQTPSNNITG SLTPQQLARS HSALAESEDP SSSTAPSANR LSPMNSLSRT HQGSRNLTDM 780 TTSPHIDNLL QEIQSKPDNR NKNDLQSSKE TIPVPNRYPV SDQLDASSAT SFCLDESPRE 840 GFSFPPVCLD SNAQVDPRDN FLIAENVDSL MPDALLSRGM GSGKDICNLP SGQRDHREVD 900 NELSSAAFSS QSFGVPDISF KPGCSGDIAV NDGGMPSQGL WNNQTQRMRT FTKVQKRGSV 960 GRSIDITRYT NYDELRHDLA CMFGIQGQLE DPYRMDWKLV YVDHENDILL VGDDPWEEFV 1020 SCVKSIKILS SVEVQQMSLD GDLGGIPSQT QACSASDDAN AWRGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC7AG019880.2 |