PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG059820.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 999aa MW: 110054 Da PI: 9.017

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG059820.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.9e-06	309	328	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f + G C++G++C+++H+ TRIDC6BG059820.2 309 CHEFVK-GRCSRGASCRYIHD 328 9***.***********7 PP
2	zf-CCCH	24.2	5.8e-08	365	386	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G C++G++C++ H TRIDC6BG059820.2 365 KRPCKFFAE-GRCRRGETCPYLH 386 689****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence
MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRHKD VIPTQDLTND NGKRLGESSN 60 LKPDAFLHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE 120 KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR 180 SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR 240 FPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYV RSRQPRGHFD EGTWERSEPR 300 RDYRASDQCH EFVKGRCSRG ASCRYIHDES ASHSGWRDDA RETAHVRGGP DSSFGNRTEH 360 RREQKRPCKF FAEGRCRRGE TCPYLHEEAP QSQMGPGASD EPPKYSGGRT PRGNYSNWGE 420 ETNATHAGSH ILSRDDRENP SSQHTARSDT GYGYKNRQLE DAGRDQYQII PQEEFGSQGR 480 NKPEMAASKQ PQFLSPIQTS ADSMNNDKVS DMDGLSASAT TGNLSMQTGI HAANLLGGQS 540 LSQIAQSQDA VPQTSGAPIH PVTSQQQDAT SMLPFNIQPH ESNFSLHPNR QDQFSNFSLH 600 PDRQDQFVAS QATANNSAPS MQNQPVAAPS MQNQPVAAPY MGHGQHSYTL GSQALPAFNG 660 HNFSVAGQVL QDRPTPFYAG QSQATVDMSN PNQESGTHSM QNTHSFQPVA PNMQAHSQAL 720 QGLSGVPSQD TGTQSIQNAH NFQPVAPPYM QSRGQTLQGL SILPSSSSSD KPGAPLVPPN 780 EEEIRRSLTS LAATLIMQPG TGAGLQLPQP ILNPSLMASL SAVEPSQWPW AQQQQAGTTQ 840 LARSEQQAPQ QTLPAPSTAV GSSNGNNPAP QSVGQTAATS VVTAPQAAEN KKVEAKAKDS 900 DGEQDGDKNK KGNKEESKAL KMFKLALADF VKDALKPTWK EGQLTREVHK TIVKKVVDKV 960 TSTVENTPPT KEKIDVYMSY SKEKLSKLVQ AYVGKYVKA

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence

MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRHKD VIPTQDLTND NGKRLGESSN  60
LKPDAFLHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE  120
KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR  180
SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR  240
FPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYV RSRQPRGHFD EGTWERSEPR  300
RDYRASDQCH EFVKGRCSRG ASCRYIHDES ASHSGWRDDA RETAHVRGGP DSSFGNRTEH  360
RREQKRPCKF FAEGRCRRGE TCPYLHEEAP QSQMGPGASD EPPKYSGGRT PRGNYSNWGE  420
ETNATHAGSH ILSRDDRENP SSQHTARSDT GYGYKNRQLE DAGRDQYQII PQEEFGSQGR  480
NKPEMAASKQ PQFLSPIQTS ADSMNNDKVS DMDGLSASAT TGNLSMQTGI HAANLLGGQS  540
LSQIAQSQDA VPQTSGAPIH PVTSQQQDAT SMLPFNIQPH ESNFSLHPNR QDQFSNFSLH  600
PDRQDQFVAS QATANNSAPS MQNQPVAAPS MQNQPVAAPY MGHGQHSYTL GSQALPAFNG  660
HNFSVAGQVL QDRPTPFYAG QSQATVDMSN PNQESGTHSM QNTHSFQPVA PNMQAHSQAL  720
QGLSGVPSQD TGTQSIQNAH NFQPVAPPYM QSRGQTLQGL SILPSSSSSD KPGAPLVPPN  780
EEEIRRSLTS LAATLIMQPG TGAGLQLPQP ILNPSLMASL SAVEPSQWPW AQQQQAGTTQ  840
LARSEQQAPQ QTLPAPSTAV GSSNGNNPAP QSVGQTAATS VVTAPQAAEN KKVEAKAKDS  900
DGEQDGDKNK KGNKEESKAL KMFKLALADF VKDALKPTWK EGQLTREVHK TIVKKVVDKV  960
TSTVENTPPT KEKIDVYMSY SKEKLSKLVQ AYVGKYVKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	194	RSRSRERVRGR
2	186	196	RSRSRERVRGR
3	188	198	RSRSRERVRGR
4	190	200	RSRSRERVRGR
5	192	200	RGRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-08	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG059820.2