PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG053780.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 375aa MW: 40946.4 Da PI: 5.8599

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG053780.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.3	2.5e-15	189	248	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++g+++A+++d + g ++ k+++lg+++t+++Aa+a++ a++k++g TRIDC6BG053780.3 189 SCFHGVTRHRWSGKYEAHLWDsTCRvEGrrRKgKQVYLGSYDTEQKAARAYDVAALKFFG 248 789****************777786666336******99*********9986 PP
2	AP2	48.7	1.8e-15	291	342	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++ k+grW A+I g ++ ++lg+f t+eeAa+a++ a+ +++g TRIDC6BG053780.3 291 SIYRGVTRRQKDGRWQARIGLiA---G-TRDIYLGTFKTEEEAAEAYDIAAIEIRG 342 57**************88832...2.5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MMKSGEEVSQ GQQMNGFVEE KAAGESGYGR KIERSPSINL NSLPAIAPAT AEIGVLHGAV 60 ESEANDASTH KGDESSGTDQ KKVPKNEEVD EAEVQACADV KSHSVDPLNS ENHAGEKDAL 120 VTVPENEGCA DGGDNHKGVH VLSIVKKDES EEIVDSINPV TVAGYREEKG TAGSTSAITA 180 VRAPGSRSSC FHGVTRHRWS GKYEAHLWDS TCRVEGRRRK GKQVYLGSYD TEQKAARAYD 240 VAALKFFGLN TKLNFSISEY EKELADIQDM SPEECVTYLR RRSSCFSRGA SIYRGVTRRQ 300 KDGRWQARIG LIAGTRDIYL GTFKTEEEAA EAYDIAAIEI RGKNAVTNFD RSNYMDRGMH 360 CIEGAGLKLL ATKPE

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MMKSGEEVSQ GQQMNGFVEE KAAGESGYGR KIERSPSINL NSLPAIAPAT AEIGVLHGAV  60
ESEANDASTH KGDESSGTDQ KKVPKNEEVD EAEVQACADV KSHSVDPLNS ENHAGEKDAL  120
VTVPENEGCA DGGDNHKGVH VLSIVKKDES EEIVDSINPV TVAGYREEKG TAGSTSAITA  180
VRAPGSRSSC FHGVTRHRWS GKYEAHLWDS TCRVEGRRRK GKQVYLGSYD TEQKAARAYD  240
VAALKFFGLN TKLNFSISEY EKELADIQDM SPEECVTYLR RRSSCFSRGA SIYRGVTRRQ  300
KDGRWQARIG LIAGTRDIYL GTFKTEEEAA EAYDIAAIEI RGKNAVTNFD RSNYMDRGMH  360
CIEGAGLKLL ATKPE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	223	GRRRKGKQ
2	280	301	RRRSSCFSRGASIYRGVTRRQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-68	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG053780.3