PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC6BG052420.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 220aa MW: 23651.6 Da PI: 7.9136 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 14 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +G +W+++++ g ++k+c++rw +yl TRIDC6BG052420.4 14 KGPWTAEEDQKLVAFLLSHGHCCWRLVPKLAG--QCGKSCRLRWTNYL 59 79*****************************9..7***********97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 68 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 + +E++l +d++ qlG++ +W++Ia++++ gRt++++k++w+++ TRIDC6BG052420.4 68 LSDDEEKLVIDLHSQLGNRcRWSKIAARLP-GRTDNEIKNHWNTH 111 589***************************.************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence |
MGRQPCCEKV GLKKGPWTAE EDQKLVAFLL SHGHCCWRLV PKLAGQCGKS CRLRWTNYLR 60 PDLKRGLLSD DEEKLVIDLH SQLGNRCRWS KIAARLPGRT DNEIKNHWNT HIRKKLKKMG 120 LDPVTHQPVA ASRADPLQDP QQDPHCDGKA SSQESAGYGT GASAEEEALT SAEPKQGATC 180 SASTASAVSP SPCSSSSASA SASAATPGGA DVDWPDPLDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66230.1 | 1e-76 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC6BG052420.4 |