PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG048250.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 323aa    MW: 35723.3 Da    PI: 6.5704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG048250.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12187212126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd+CkF+H+
  TRIDC6BG048250.2 187 YQPDICKDYKETGYCGYGDSCKFMHD 212
                       67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
PYPMSDGGGE PGAGGSAPVC NFVQKPPKNI RKRPAASVGS DDEEGSGGDD SGAIAAARSK  60
KPPPTTSKLF FSSADNSHEP RRFQFESSRT IQSSTDNRAT ATLETETAYD RDARAIRERQ  120
LKQAEESLKK NPSASSSSGE LYKGIHGYTD HKAGFRREHT VSGEKAGGAH GPLRASAHIR  180
LSTRFDYQPD ICKDYKETGY CGYGDSCKFM HDRGDYKSGW QLEREWDEAE KARKRRIAMR  240
ELGGSDGEAE EEDSDDEEAL PFACFICREP FVDPVVTKCK HYFCEHCALK SHELLKHQHL  300
HTTSSSGNIV DSAQIYMNLP YIT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-109C3H family protein