PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG048250.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 341aa MW: 37749.8 Da PI: 7.46

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG048250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.6e-12	218	243	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ TRIDC6BG048250.1 218 YQPDICKDYKETGYCGYGDSCKFMHD 243 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
KSDCPGDEPE QGFRARLFFV SFPSTARPPP KPYPMSDGGG EPGAGGSAPV CNFVQKPPKN 60 IRKRPAASVG SDDEEGSGGD DSGAIAAARS KKPPPTTSKL FFSSADNSHE PRRFQFESSR 120 TIQSSTDNRA TATLETETAY DRDARAIRER QLKQAEESLK KNPSASSSSG ELYKGIHGYT 180 DHKAGFRREH TVSGEKAGGA HGPLRASAHI RLSTRFDYQP DICKDYKETG YCGYGDSCKF 240 MHDRGDYKSG WQLEREWDEA EKARKRRIAM RELGGSDGEA EEEDSDDEEA LPFACFICRE 300 PFVDPVVTKC KHYFCEHCAL KHHSKNKKCF VCNKPTLGIF N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-123	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG048250.1