PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG046540.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 407aa MW: 43909.9 Da PI: 7.5739

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG046540.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	1e-06	85	105	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+ff++ G C yG++C++ H TRIDC6BG046540.3 85 RPCKFFLA-GDCTYGEKCRYPH 105 79****.********965 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
SSSSTKVCIH WRAGRCNRFP CPFLHSELPE AATTKRPNQR DGPGGHVWRN PNSGGGGRGG 60 GGGFNKWGRG PGGADGGVRH KVPDRPCKFF LAGDCTYGEK CRYPHTYCMS NSITLLTPLQ 120 GHEKVVTGIA LPTGSDKLYS GSKDGTVRLW DCQTGQCAGV LPVGGEVGCM ISEGPWLFVG 180 IPDAVKVWNM QTQAEMNLTG PTGQVYALAI GNELLFAATQ DGRILAWRFS AVTNCFEPAA 240 SLTGHQLAVV SLIVGGMRVY SGSMDKTIRV WDLATLQCIQ TLSDHTNVVM SLLCWDQFLL 300 SCSLDQTIKV WAATESGNLE VTYTHKEENG ALALTGMPDA QSKPVLVCSL NDNTVRLYDL 360 PSFSDRGRIF SKQEIRAIQT GPGGLFFTGD GTGELKVWQW IIDASQT

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

SSSSTKVCIH WRAGRCNRFP CPFLHSELPE AATTKRPNQR DGPGGHVWRN PNSGGGGRGG  60
GGGFNKWGRG PGGADGGVRH KVPDRPCKFF LAGDCTYGEK CRYPHTYCMS NSITLLTPLQ  120
GHEKVVTGIA LPTGSDKLYS GSKDGTVRLW DCQTGQCAGV LPVGGEVGCM ISEGPWLFVG  180
IPDAVKVWNM QTQAEMNLTG PTGQVYALAI GNELLFAATQ DGRILAWRFS AVTNCFEPAA  240
SLTGHQLAVV SLIVGGMRVY SGSMDKTIRV WDLATLQCIQ TLSDHTNVVM SLLCWDQFLL  300
SCSLDQTIKV WAATESGNLE VTYTHKEENG ALALTGMPDA QSKPVLVCSL NDNTVRLYDL  360
PSFSDRGRIF SKQEIRAIQT GPGGLFFTGD GTGELKVWQW IIDASQT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	63	GGGGRGGGGG
2	55	64	GGGGRGGGGG
3	56	65	GGGGRGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51980.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG046540.3