PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G51980.1
Common NameMSG15.6, ZFWD2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 437aa    MW: 47287.6 Da    PI: 7.5306
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G51980.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06113134426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+f+   G C yGd+C++ H+
  AT5G51980.1 113 KVCNFWVD-GNCTYGDKCRYLHC 134
                  68**9*99.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00183055IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.0843056IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6109133IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5113131IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4113134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.0E-45132427IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.4E-5140179IPR001680WD40 repeat
SuperFamilySSF509781.65E-46140430IPR017986WD40-repeat-containing domain
PfamPF004000.0014144179IPR001680WD40 repeat
PROSITE profilePS5029420.197147396IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.182147188IPR001680WD40 repeat
PROSITE patternPS006780166180IPR019775WD40 repeat, conserved site
PRINTSPR003207.3E-7166180IPR020472G-protein beta WD-40 repeat
SMARTSM003205.9219256IPR001680WD40 repeat
SMARTSM003200.006263300IPR001680WD40 repeat
PfamPF004000.021265300IPR001680WD40 repeat
PROSITE profilePS5008211.678270309IPR001680WD40 repeat
PRINTSPR003207.3E-7287301IPR020472G-protein beta WD-40 repeat
SMARTSM003203.6E-4303340IPR001680WD40 repeat
PfamPF004000.0027305339IPR001680WD40 repeat
PRINTSPR003207.3E-7327341IPR020472G-protein beta WD-40 repeat
SMARTSM003203.3344387IPR001680WD40 repeat
SMARTSM003204.7390427IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0005575Cellular Componentcellular_component
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDFDLNGGNK RVFNRLGGGG GSTRPMAPTD TRQKVCFHWR AGRCNRSPCP YLHRELPGPG  60
PGQGQGPGYT NKRVAEESGF AGPSHRRGPG FNGNSSSSWG RFGGNRTVTK TEKVCNFWVD  120
GNCTYGDKCR YLHCWSKGES FALLTQLDGH EKLVSGIALP SGSDKLYTGS KDETLRVWDC  180
ASGQCTGVLK LGGEIGCVLS EGPWLLVGMP NLVKAWNIET NADQSLSGPV GQVYSLVVGT  240
DLLFAGTQDG SILAWRYNAA TNCFEPSASL TGHTLAVVTL YVGANRLYSG SMDKTIKVWS  300
LDNLQCIQTL TDHSSVVMSL ICWDQFLLSC SLDNTVKIWA AIEGGNLEVT YTHKEEHGVL  360
ALCGVHDAEA KPVLLCACND NTLRLYDLPS FTERGKIFAK QEIRAIQIGP GGIFFTGDGT  420
GQVKVWKWCT EPTAALP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B3e-20120390169391F-box/WD repeat protein 7
2ovq_B3e-20120390169391F-box/WD repeat protein 7
2ovr_B3e-20120390169391F-box/WD repeat protein 7
5v4b_B3e-20120390169391F-box/WD repeat-containing protein 7
6g6m_A2e-201444268323Tako8
6g6n_A2e-201444268323Tako8
6g6n_B2e-201444268323Tako8
6g6n_C2e-201444268323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.296480.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1865313610.0
Genevisible248388_at0.0
Expression AtlasAT5G51980-
AtGenExpressAT5G51980-
ATTED-IIAT5G51980-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G51980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G51980
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520640.0AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318784.10.0Transducin/WD40 repeat-like superfamily protein
RefseqNP_200011.10.0Transducin/WD40 repeat-like superfamily protein
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A178UQQ60.0A0A178UQQ6_ARATH; Uncharacterized protein
STRINGAT5G51980.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Terol J,Bargues M,P
    ZFWD: a novel subfamily of plant proteins containing a C3H zinc finger and seven WD40 repeats.
    Gene, 2000. 260(1-2): p. 45-53
    [PMID:11137290]
  2. Vandepoele K,Simillion C,Van de Peer Y
    Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice.
    Trends Genet., 2002. 18(12): p. 606-8
    [PMID:12446138]
  3. Castelli V, et al.
    Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.
    Genome Res., 2004. 14(3): p. 406-13
    [PMID:14993207]
  4. DeCook R,Lall S,Nettleton D,Howell SH
    Genetic regulation of gene expression during shoot development in Arabidopsis.
    Genetics, 2006. 172(2): p. 1155-64
    [PMID:15956669]
  5. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  6. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  7. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]