PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG046540.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 317aa    MW: 33768.4 Da    PI: 8.9601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG046540.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-07111131425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       ++C+ff++ G C yG++C++ H
  TRIDC6BG046540.1 111 RPCKFFLA-GDCTYGEKCRYPH 131
                       79******.**********965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT  60
KRPNQRDGPG GHVWRNPNSG GGGRGGGGGF NKWGRGPGGA DGGVRHKVPD RPCKFFLAGD  120
CTYGEKCRYP HTYCMSNSIT LLTPLQGHEK VVTGIALPTG SDKLYSGSKD GTVRLWDCQT  180
GQCAGVLPVG GEVGCMISEG PWLFVGIPDA VKVWNMQTQA EMNLTGPTGQ VYALAIGNEL  240
LFAATQDGRI LAWRFSAVTN CFEPAASLTG HQLAVVSLIV GGMRVYSGSM DKTIRVNICF  300
ILCVSSNGGS WKYAQAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18089GGGGRGGGGG
28190GGGGRGGGGG
38291GGGGRGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-105C3H family protein