PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG021410.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-PHD | ||||||||
Protein Properties | Length: 434aa MW: 47855.2 Da PI: 5.0481 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.8e-09 | 285 | 331 | 6 | 52 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e +++L + F+++ p +e +e L+++lg++ +++ WF+N R TRIDC6BG021410.4 285 RIPPEAVQVLRKSFAESELPAREVKESLSTELGISFEKIDKWFKNTR 331 667899***************************************99 PP | |||||||
2 | PHD | 31.5 | 4e-11 | 21 | 74 | 1 | 50 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg.ewlCeeCke 50 +C+ C++ s ++++++C+g Ck ++H kC +++l+++ g wlC+ C + TRIDC6BG021410.4 21 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCSEPPLDRSLPTGGpGWLCKFCLC 74 6999**987778*******966**************966555559*******86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence |
MEDSVMPPDE SVKSVNPDNT ICSRCKSPES VPNNKFIFCE GACKMAYHEK CSEPPLDRSL 60 PTGGPGWLCK FCLCKMKILE AVNAHLGTSL TVMCPSKDIF KEATKEVDSE DGLGEDWLSE 120 YSGDEDYDPE ENDFTSSSLD SGEESISDQS NCSGSPLYSP NDDIPGFISA DFTDAEGFYH 180 TNSNLGIDSG DDDVAEMLTY QRPKREVDYK RLNEVGALTA FHPSQEMFGK LTENEKQSED 240 EDWGTNNRRK KRRVHSAGVG VKSAEGLSDV KSNEKAQPQR RKLFRIPPEA VQVLRKSFAE 300 SELPAREVKE SLSTELGISF EKIDKWFKNT RCAALRDRKA EGNSRVAGPS KRSRRSAGKS 360 GSSVKIDSVD NSYLIPASEI ISVPTHPQGI PERKPESTSR TVRRLVHDKG APLCPPAEVK 420 ESTSPTTKPG LNPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 5e-49 | HB-PHD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG021410.4 |