PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G29940.2 | ||||||||
Common Name | PRHA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HB-PHD | ||||||||
Protein Properties | Length: 769aa MW: 87582 Da PI: 4.6165 | ||||||||
Description | pathogenesis related homeodomain protein A | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 33.5 | 7e-11 | 462 | 506 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F+++ ps++ r +LAk+l+L+ ++V WF+N R+ AT4G29940.2 462 RNAVEKLRQVFAETELPSKAVRDRLAKELSLDPEKVNKWFKNTRY 506 678999*************************************97 PP | |||||||
2 | PHD | 41.9 | 2.2e-14 | 192 | 247 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + +++++lCd +C+++fH+kCl+++le+e++p g w+C+ C++k AT4G29940.2 192 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 247 6999***55455********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 3.09E-14 | 183 | 249 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 2.2E-12 | 188 | 247 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.976 | 190 | 247 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 1.5E-11 | 192 | 247 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 2.06E-32 | 192 | 244 | No hit | No description |
SMART | SM00249 | 7.7E-10 | 192 | 245 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 193 | 244 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 439 | 505 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.56E-11 | 450 | 516 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.313 | 451 | 511 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-11 | 453 | 515 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.76E-9 | 454 | 506 | No hit | No description |
Pfam | PF00046 | 2.0E-8 | 462 | 506 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000035 | anatomy | cotyledon vascular system | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0002000 | anatomy | stomatal complex | ||||
PO:0005660 | anatomy | hydathode | ||||
PO:0008015 | anatomy | hypocotyl vascular system | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009073 | anatomy | stigma | ||||
PO:0020041 | anatomy | stipule | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007131 | developmental stage | seedling development stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 769 aa Download sequence Send to blast |
MEESETKGRI SQETDKACVS VERIGSTLLS SFVKKGKEVS NKRNSKQNKR KAEEELCSKS 60 RTKKYSRGWV RCEEMEEEKV KKTRKRKSKR QQKDNKVEVD DSLRLQRRTR YLLIKMKMQQ 120 NLIDAYATEG WKGQSREKIR PDKELERARK EILNCKLGLR DAIRQLDLLS SVGSMEEKVI 180 ASDGSIHHDH IFCAECNSRE AFPDNDIILC DGTCNRAFHQ KCLDPPLETE SIPPGDQGWF 240 CKFCDCKIEI IDTMNAQIGT HFPVDSNWQD IFNEEASLPI GSEATVNNEA DWPSDDSKDD 300 DYDPEMRENG GGNSSNVSGD GGGDNDEESI STSLSLSSDG VALSTGSWEG HRLSNMVEQC 360 ETSNEETVCG PRQRRTVDYT QLYYEMFGKD AVLQEQGSED EDWGPNDRRK RKRESDAGST 420 LVTMCESSKK DQDVVETLEQ SERDSVSVEN KGGRRRMFRL PRNAVEKLRQ VFAETELPSK 480 AVRDRLAKEL SLDPEKVNKW FKNTRYMALR NRKTESVKQP GDSKTVSGGD SGPEAVMENN 540 TETNEVQDTL DDTVPPGFDA TNQNILSPCN NNQEEFQQEN VSFPSPTDES QQYLEQNDSS 600 FVLVPHEKQS SEISLKTAVE ENETESKMMK EPHEELSREM SLKTAVEEKE TESKMMEEPH 660 DELNSEMSLS TAVEEKETGS KMTEESHEEL SNEMSLEEKE TGRKMTEEEE LEAVMEMLCR 720 TENKLLDVTQ RLDRFKTPKG RKKLGNSSSP LLEEDSVVYV PIAEIKEKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 87 | TRKRKS |
2 | 407 | 412 | RRKRKR |
3 | 452 | 459 | GRRRMFRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.19983 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 507219 | 0.0 | ||||
Genevisible | 253648_at | 0.0 | ||||
Expression Atlas | AT4G29940 | - | ||||
AtGenExpress | AT4G29940 | - | ||||
ATTED-II | AT4G29940 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding. | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G29940.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G29940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATHPRHA | 0.0 | L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190867.1 | 0.0 | pathogenesis related homeodomain protein A | ||||
Swissprot | P48785 | 0.0 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | F4JPG3 | 0.0 | F4JPG3_ARATH; Pathogenesis related homeodomain protein A | ||||
STRING | AT4G29940.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G29940.2 |
Entrez Gene | 829117 |
iHOP | AT4G29940 |
wikigenes | AT4G29940 |