PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG021410.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 423aa MW: 46746 Da PI: 4.981

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG021410.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	274	320	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e +++L + F+++ p +e +e L+++lg++ +++ WF+N R TRIDC6BG021410.3 274 RIPPEAVQVLRKSFAESELPAREVKESLSTELGISFEKIDKWFKNTR 320 667899***************************************99 PP
2	PHD	31.6	3.8e-11	21	74	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg.ewlCeeCke 50 +C+ C++ s ++++++C+g Ck ++H kC +++l+++ g wlC+ C + TRIDC6BG021410.3 21 ICSRCKSpeSVPNNKFIFCEGaCKMAYHEKCSEPPLDRSLPTGGpGWLCKFCLC 74 6999987778***966**********966555559*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEDSVMPPDE SVKSVNPDNT ICSRCKSPES VPNNKFIFCE GACKMAYHEK CSEPPLDRSL 60 PTGGPGWLCK FCLCKMKILE AVNAHLGTSL TVMCPSKDIF KEATKEVDSE DGLGEDWLSE 120 YSGDEDYDPE ENDFTSSSLD SGEESISDQS NCSGSPLYSP NDDIPGFISA DFTDAEGFYH 180 TNSNLGIDSG DDDVAEMLTY QRPKREVDYK RLNEEMFGKL TENEKQSEDE DWGTNNRRKK 240 RRVHSAGVGV KSAEGLSDVK SNEKAQPQRR KLFRIPPEAV QVLRKSFAES ELPAREVKES 300 LSTELGISFE KIDKWFKNTR CAALRDRKAE GNSRVAGPSK RSRRSAGKSG SSVKIDSVDN 360 SYLIPASEII SVPTHPQGIP ERKPESTSRT VRRLVHDKGA PLCPPAEVKE STSPTTKPGL 420 NPS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEDSVMPPDE SVKSVNPDNT ICSRCKSPES VPNNKFIFCE GACKMAYHEK CSEPPLDRSL  60
PTGGPGWLCK FCLCKMKILE AVNAHLGTSL TVMCPSKDIF KEATKEVDSE DGLGEDWLSE  120
YSGDEDYDPE ENDFTSSSLD SGEESISDQS NCSGSPLYSP NDDIPGFISA DFTDAEGFYH  180
TNSNLGIDSG DDDVAEMLTY QRPKREVDYK RLNEEMFGKL TENEKQSEDE DWGTNNRRKK  240
RRVHSAGVGV KSAEGLSDVK SNEKAQPQRR KLFRIPPEAV QVLRKSFAES ELPAREVKES  300
LSTELGISFE KIDKWFKNTR CAALRDRKAE GNSRVAGPSK RSRRSAGKSG SSVKIDSVDN  360
SYLIPASEII SVPTHPQGIP ERKPESTSRT VRRLVHDKGA PLCPPAEVKE STSPTTKPGL  420
NPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	6e-52	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG021410.3