PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG002060.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 753aa MW: 79690.9 Da PI: 6.53

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG002060.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.4	6e-31	562	647	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+kqev aLi++r+ +++r+++ lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+ TRIDC6BG002060.2 562 RWPKQEVEALIRVRSGLDNRFQEPGLKGPLWEEVSARMAAAGYgGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 647 8****************************************99*********************98.99999*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MQSGYGGVSE FQQFIMDGGF AMAAAPQQQA QAAAAAAAGG QELGAPFRYQ PLHHHAMQHH 60 HQQQQQQHPP QMPPHFAHFG VAPAAAAAAG GIPFTQQFLN HQAAAAGHHH QQQHHHHLQL 120 FHHEQQQQHH KPQQPPARWT PQQQHHHQHP HHQQQQQHHH HQLGLDVEAA AVPESTRATS 180 GGAAPPGVPP FLAAAMNFKL AVDPGGGSGA TDDALNDGAG GGGGAGSGMM LHGGGGGGGD 240 DEAATESRLR RWTGEEETSI KEPTWRPLDI DYIHSTSSSS KRKEKVATPE SPAPVAPAAN 300 YFKKAGGGDD DNAGAAASAG VGGGNYKLFS ELEAIYKPGS GGGAGQTGSG SGLTGDDNAI 360 LPPPSMADLP GGAAAAAVDA PQANTSETSA GEDAPAVLQP QPPPPPQQAS VGEARRKRKR 420 RRQEQQQQLT ASASFFEQLV QRLIEHQEGL HRQFLDAMER RERERAARDE AWRRQEADKF 480 AREAAARAQD RASAAARETA IIAYLEKLSG ETITLPPPAA ANHAPTSADD ATSHDAGGAG 540 RELVPYEYGG ELSLPLMSSS SRWPKQEVEA LIRVRSGLDN RFQEPGLKGP LWEEVSARMA 600 AAGYGGRSAK RCKEKWENIN KYFRKAKESG KKRPAHAKTC PYFDELDRLY SRSSAHASGA 660 SSAAGNNTST KATANAITSA DDAANKASSE LLDAVVKYPA DTHYGPPPGF PNDGGNADTK 720 DDGEGDADMG RASGRAGEEH DDEAGQSHGH DDD

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MQSGYGGVSE FQQFIMDGGF AMAAAPQQQA QAAAAAAAGG QELGAPFRYQ PLHHHAMQHH  60
HQQQQQQHPP QMPPHFAHFG VAPAAAAAAG GIPFTQQFLN HQAAAAGHHH QQQHHHHLQL  120
FHHEQQQQHH KPQQPPARWT PQQQHHHQHP HHQQQQQHHH HQLGLDVEAA AVPESTRATS  180
GGAAPPGVPP FLAAAMNFKL AVDPGGGSGA TDDALNDGAG GGGGAGSGMM LHGGGGGGGD  240
DEAATESRLR RWTGEEETSI KEPTWRPLDI DYIHSTSSSS KRKEKVATPE SPAPVAPAAN  300
YFKKAGGGDD DNAGAAASAG VGGGNYKLFS ELEAIYKPGS GGGAGQTGSG SGLTGDDNAI  360
LPPPSMADLP GGAAAAAVDA PQANTSETSA GEDAPAVLQP QPPPPPQQAS VGEARRKRKR  420
RRQEQQQQLT ASASFFEQLV QRLIEHQEGL HRQFLDAMER RERERAARDE AWRRQEADKF  480
AREAAARAQD RASAAARETA IIAYLEKLSG ETITLPPPAA ANHAPTSADD ATSHDAGGAG  540
RELVPYEYGG ELSLPLMSSS SRWPKQEVEA LIRVRSGLDN RFQEPGLKGP LWEEVSARMA  600
AAGYGGRSAK RCKEKWENIN KYFRKAKESG KKRPAHAKTC PYFDELDRLY SRSSAHASGA  660
SSAAGNNTST KATANAITSA DDAANKASSE LLDAVVKYPA DTHYGPPPGF PNDGGNADTK  720
DDGEGDADMG RASGRAGEEH DDEAGQSHGH DDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	415	420	RRKRKR
2	415	421	RRKRKRR
3	416	421	RKRKRR
4	416	422	RRKRKRR
5	417	422	KRKRRR
6	418	422	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-36	Trihelix family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG002060.2