PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG053880.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 317aa MW: 34824.4 Da PI: 7.3201

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG053880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.9	8.2e-11	18	58	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+nks r t+ R + + KA+E+S+LC+a+++v+++ + TRIDC6AG053880.1 18 YIKNKSSRRRTLDTRMKNLASKAHEVSILCNAKACVLVYDE 58 59************************************965 PP
2	K-box	15	1e-06	96	152	16	66
K-box 16 slqqelakLkkeienLq......reqRhllGedLesLslkeLqqLeqqLekslkkiR 66 l+q l+kL+ e ++++ ++ +lG dL +L++ eL + ++Le+ lk++ TRIDC6AG053880.1 96 FLSQRLSKLQVEENKIRdpeiriLLHKAMLGSDLPDLKVDELTIVSSRLEEILKSVA 152 4455555555555544444433334579***********************999985 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
SHFIPLLAMA RKKIALQYIK NKSSRRRTLD TRMKNLASKA HEVSILCNAK ACVLVYDEGN 60 AAPKVYPSHP EAVDILNRYK TMADGRFKKT VNQEDFLSQR LSKLQVEENK IRDPEIRILL 120 HKAMLGSDLP DLKVDELTIV SSRLEEILKS VAQSIAKISG QPPVLQPQVP YIPDNMDMGG 180 SSAMYLASQP APYVTNNMDM GSFAMNQQSS PTPYVTDNMH VGSPTMYQVP PQHEGWLDKV 240 RSGRNLDALA HNGYNTAGHD GADTSTNVGY STNWHDGPGT SANTGSSSGM KSLDVGFGWQ 300 SGGVDPEESS WSLFPPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.3	4e-21	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG053880.1