PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG051060.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 989aa MW: 109263 Da PI: 8.9407

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG051060.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.4e-06	309	328	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f + G C++G++C++ H+ TRIDC6AG051060.3 309 CHEFVK-GRCSRGASCRYVHD 328 9***.***********7 PP
2	zf-CCCH	24	6.7e-08	365	386	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C+ff++ G C++G++C++ H TRIDC6AG051060.3 365 KRPCKFFSE-GRCRRGETCPYLH 386 689****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence
MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN 60 LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE 120 KATGNQAMSR NADDRRRGDE WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR 180 SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR 240 IPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYV RSRQPRGHFD EGTWERSEPR 300 RDYRSSDQCH EFVKGRCSRG ASCRYVHDES ASHAGWRDDA RETAHVRGGP DSSFGNRTEH 360 RREQKRPCKF FSEGRCRRGE TCPYLHEEAP QSQMAPGASD EPPKYSGGRT PRGNYSNWGE 420 ETNATHAGSH ILSRDDRENP GSQHTARSDT GYGYKNRQLE DAGRDQYQII PQEDFCSQGR 480 NKPEMSASKQ PQFLSPIQTS ADSMNNDKVS DMDGLSASAT TGNLNMQTGI NAANLLGGQS 540 LSQIAQSQDA VPQTSTAPIH PVTSQQQDGT SMFPFNIQQH ESNFSLHPNR QDQFSNFSLH 600 PDRQDQFVAS QATANNSAPS MQNQPVAAPY MGHGQHSYTL GSQALPAFNG HNFSGAGQVP 660 QDRPTPFYAG QSQATVDMSN PNQESGTHSM QNTHSFQPVA PNMQAHSQAL QGLSGVPSQD 720 TGTQSIQNAH NFQPVAPPYM QSRGQTLQGL SILPSSSSAD MPGAPPVPPN EEEIRRSLTS 780 LAATLIMQPG TVAGLQLPQP ILNPSLMASL SAVEPSQWPW AQQQQAGTTQ LARSEQQAPR 840 QTLPAPSTAV GNSNGNNPAP QSVGQTAATS VVTAPQAAEN KKVDAKAKDS DGEQDGDKNK 900 KGNKEESKAL KMFKLALADF VKDVLKPTWK EGQLTREVHK TIVKKVVDKV TSTVENTPPT 960 KEKIDVYMSY SKEKLSKLVQ AYVGKYVKA

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence

MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN  60
LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE  120
KATGNQAMSR NADDRRRGDE WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR  180
SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR  240
IPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYV RSRQPRGHFD EGTWERSEPR  300
RDYRSSDQCH EFVKGRCSRG ASCRYVHDES ASHAGWRDDA RETAHVRGGP DSSFGNRTEH  360
RREQKRPCKF FSEGRCRRGE TCPYLHEEAP QSQMAPGASD EPPKYSGGRT PRGNYSNWGE  420
ETNATHAGSH ILSRDDRENP GSQHTARSDT GYGYKNRQLE DAGRDQYQII PQEDFCSQGR  480
NKPEMSASKQ PQFLSPIQTS ADSMNNDKVS DMDGLSASAT TGNLNMQTGI NAANLLGGQS  540
LSQIAQSQDA VPQTSTAPIH PVTSQQQDGT SMFPFNIQQH ESNFSLHPNR QDQFSNFSLH  600
PDRQDQFVAS QATANNSAPS MQNQPVAAPY MGHGQHSYTL GSQALPAFNG HNFSGAGQVP  660
QDRPTPFYAG QSQATVDMSN PNQESGTHSM QNTHSFQPVA PNMQAHSQAL QGLSGVPSQD  720
TGTQSIQNAH NFQPVAPPYM QSRGQTLQGL SILPSSSSAD MPGAPPVPPN EEEIRRSLTS  780
LAATLIMQPG TVAGLQLPQP ILNPSLMASL SAVEPSQWPW AQQQQAGTTQ LARSEQQAPR  840
QTLPAPSTAV GNSNGNNPAP QSVGQTAATS VVTAPQAAEN KKVDAKAKDS DGEQDGDKNK  900
KGNKEESKAL KMFKLALADF VKDVLKPTWK EGQLTREVHK TIVKKVVDKV TSTVENTPPT  960
KEKIDVYMSY SKEKLSKLVQ AYVGKYVKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	194	RSRSRERVRGR
2	186	196	RSRSRERVRGR
3	188	198	RSRSRERVRGR
4	190	200	RSRSRERVRGR
5	192	200	RGRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-10	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG051060.3