PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG039910.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 260aa    MW: 29583.4 Da    PI: 8.9243
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG039910.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009e-32958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  TRIDC6AG039910.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                      79**********************************************95 PP
2K-box105.56.6e-3578171699
             K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +++ + ++++s++qe++kLk++ e Lqr+qRhllGedL++Ls+keLqqLe+qLe sl+  R++K++l++eq+eel++ke++l ++n++L++kl
  TRIDC6AG039910.1  78 DSNGALSETQSWYQEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECSLSLARQRKTQLMMEQVEELRRKERQLGDINRQLKHKL 170
                       344466788***********************************************************************************9 PP

             K-box  99 e 99 
                       +
  TRIDC6AG039910.1 171 D 171
                       7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
GTTKTLERYQ HCCYNAQDSN GALSETQSWY QEMSKLKAKF EALQRTQRHL LGEDLGPLSV  120
KELQQLEKQL ECSLSLARQR KTQLMMEQVE ELRRKERQLG DINRQLKHKL DAEGSNSNNY  180
RAMQQITWAA GTVVDEGAAA YHMQQQQQQQ HPNHSAAMDC EPTLQIGYPH QFAAPDQAAN  240
NIPRSSAPGG ENNFMLGWVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-97MIKC_MADS family protein