PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG014880.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1147aa MW: 127799 Da PI: 6.8618

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG014880.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.2	2.6e-22	144	245	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F ++ TRIDC6AG014880.3 144 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RD 233 99****************************9999986.*********************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ TRIDC6AG014880.3 234 EKQQLLLGIRRA 245 88889**997 PP
2	Auxin_resp	114	1.4e-37	270	353	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+ +rr++Gt++g+sdldpvrW+nS+WrsL+ TRIDC6AG014880.3 270 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsSQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 353 799******************************9899*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1147 aa Download sequence
WRSRRRAPPS RRRLHAKLLF LVADAAVGAG ERKAPAINGE LWHACAGPLV SLPPVGSLVV 60 YFPQGHSEQV AASMQKDVEA HVPSYPNLPS KLICLLHSVT LQADPDTDEV YAQMTLQPVN 120 TYAKEALQLS ELALRQARPQ MEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFSLQPP 180 CQELQARDIH DNVWTFRHIF RGQPKRHLLT TGWSLFVSGK KLFAGDSVIF VRDEKQQLLL 240 GIRRANRQPT NISSSVLSSD SMHIGVLAAA AHASANTSPF TIFYNPRASP TEFVIPFAKY 300 QKAMYSSQIS LGMRFRMMCE TEELGTRRYM GTITGISDLD PVRWKNSQWR SLQVGWDESA 360 AGERRNRVSI WEIEPLAAPF FICPQPFFGV KRPRQLDDES LEMESLMKRA MPWLGEEVCI 420 KDPQTQSATM PGLSLVQWMN MNRQQSSSLA STAMQSEYLR SASNPAMQNI GAADLARQLY 480 MQNHLLQQNS MQFNPPKLHQ QMKPINDLSN AALPLNQLSA IRNHQDQKQD QQRQQQSSIQ 540 AIPLSQAQAQ TNIVQAQVIL QNQMQQQQQQ KQPPPSPTQN QHGASGQHLL QSHQLQDQNL 600 QMQQQQLLLH QQLQQQQQQQ QLNKLPGQLA NLASQQTQLS DQELHLQLLQ KLQQQSLMSQ 660 SAVTLSRLPI IQEQQNFLVD MQQQLSNSHS LAQQQVMPQQ DCRTSSLQTT QLPPPIQQEQ 720 QQQQQQKPSQ KQVAPTYVSE AAFAQISSTS VIPKTGNATI VPGAAQSAVT EEIPSCSTSP 780 STANGNHLAQ PTIGRNDHCK TSTEKVPHSI AQMSILIPIE AVSVTPVTTK ELPKLNNGVK 840 SSAITSKLPN VVSGLQNFMN NALPTDNLET ASSATSLWPS QTDGLLHQGF ATSNFNQHQM 900 FKDELPDVEI QGVDPSNSAL FGMNNDGPLG FPMETEGLLE NALDSVKYQN HFSTDDENNY 960 QMQKDARQEI STSMVSQSFG QSDMAFNSID SAINDGALMN RSSWPPAAPP QRMRTFTKVY 1020 KRGAVGRSID IGRFSGYGEL NQALARMFGI EGQLEDRQRI GWKLVYTDHE DDVLLLGDDP 1080 WEEFVNCVKC IRILSPQEVQ KMSLDGDLGS NVLPNQACSS SDGGNTWKPR YEQNSGNPSI 1140 GPYDQFE

Sequence ? help Back to Top

Protein Sequence Length: 1147 aa Download sequence

WRSRRRAPPS RRRLHAKLLF LVADAAVGAG ERKAPAINGE LWHACAGPLV SLPPVGSLVV  60
YFPQGHSEQV AASMQKDVEA HVPSYPNLPS KLICLLHSVT LQADPDTDEV YAQMTLQPVN  120
TYAKEALQLS ELALRQARPQ MEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFSLQPP  180
CQELQARDIH DNVWTFRHIF RGQPKRHLLT TGWSLFVSGK KLFAGDSVIF VRDEKQQLLL  240
GIRRANRQPT NISSSVLSSD SMHIGVLAAA AHASANTSPF TIFYNPRASP TEFVIPFAKY  300
QKAMYSSQIS LGMRFRMMCE TEELGTRRYM GTITGISDLD PVRWKNSQWR SLQVGWDESA  360
AGERRNRVSI WEIEPLAAPF FICPQPFFGV KRPRQLDDES LEMESLMKRA MPWLGEEVCI  420
KDPQTQSATM PGLSLVQWMN MNRQQSSSLA STAMQSEYLR SASNPAMQNI GAADLARQLY  480
MQNHLLQQNS MQFNPPKLHQ QMKPINDLSN AALPLNQLSA IRNHQDQKQD QQRQQQSSIQ  540
AIPLSQAQAQ TNIVQAQVIL QNQMQQQQQQ KQPPPSPTQN QHGASGQHLL QSHQLQDQNL  600
QMQQQQLLLH QQLQQQQQQQ QLNKLPGQLA NLASQQTQLS DQELHLQLLQ KLQQQSLMSQ  660
SAVTLSRLPI IQEQQNFLVD MQQQLSNSHS LAQQQVMPQQ DCRTSSLQTT QLPPPIQQEQ  720
QQQQQQKPSQ KQVAPTYVSE AAFAQISSTS VIPKTGNATI VPGAAQSAVT EEIPSCSTSP  780
STANGNHLAQ PTIGRNDHCK TSTEKVPHSI AQMSILIPIE AVSVTPVTTK ELPKLNNGVK  840
SSAITSKLPN VVSGLQNFMN NALPTDNLET ASSATSLWPS QTDGLLHQGF ATSNFNQHQM  900
FKDELPDVEI QGVDPSNSAL FGMNNDGPLG FPMETEGLLE NALDSVKYQN HFSTDDENNY  960
QMQKDARQEI STSMVSQSFG QSDMAFNSID SAINDGALMN RSSWPPAAPP QRMRTFTKVY  1020
KRGAVGRSID IGRFSGYGEL NQALARMFGI EGQLEDRQRI GWKLVYTDHE DDVLLLGDDP  1080
WEEFVNCVKC IRILSPQEVQ KMSLDGDLGS NVLPNQACSS SDGGNTWKPR YEQNSGNPSI  1140
GPYDQFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG014880.3