PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG005120.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 421aa MW: 47814.9 Da PI: 7.6994

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG005120.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.1	3.5e-06	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F+ + +Lk+H+++H TRIDC6AG005120.4 108 HTCEECGACFRKPAHLKQHMQSH 130 79*******************99 PP
2	zf-C2H2	21.8	4.8e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s+ rk++L+rH+ tH TRIDC6AG005120.4 136 FACPleDCPFSYIRKDHLNRHMLTH 160 78**********************9 PP
3	zf-C2H2	16.9	1.8e-05	165	190	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp Cgk+Fs k n +rH + H TRIDC6AG005120.4 165 FTCPleGCGKRFSIKANIQRHVKEmH 190 89********************9988 PP
4	zf-C2H2	16.5	2.3e-05	209	231	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ C+k F+ +s+Lk+H +H TRIDC6AG005120.4 209 CQeeGCKKAFKYPSQLKKHEESH 231 77779**************9988 PP
5	zf-C2H2	16.4	2.6e-05	298	322	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C sFs+ksnL++H++ H TRIDC6AG005120.4 298 KCSfdGCECSFSTKSNLNKHMKAcH 322 799999****************955 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
TTPSLRRRLP TAHEPAASSP APFPTAAPSA SASASEPTMS SGDGIDGDEK SEETHGKDIR 60 RIKCEFCTVV RSKMYLIRAH MVAQHKDELD ASEIYDSNGE KVVYGVGHTC EECGACFRKP 120 AHLKQHMQSH SKERSFACPL EDCPFSYIRK DHLNRHMLTH EGKLFTCPLE GCGKRFSIKA 180 NIQRHVKEMH EDEHECKMDD TKSNQQVICQ EEGCKKAFKY PSQLKKHEES HAKLDYVEVV 240 CCEPGCLKTF TNAKCLRAHN QSCHLYTHCD ICGEKHLRKN IKRHLRAHDE VHSTERLKCS 300 FDGCECSFST KSNLNKHMKA CHDQVRPFEC RVAGCGKTFP YKHVRDNHEK SSCHVYVEGD 360 YEEMDEQLRS RRGGGRKRSA VTVETLTRKR VTIPSEVSLL DDGAEYMRWM LSDGDGSNHA 420 E

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

TTPSLRRRLP TAHEPAASSP APFPTAAPSA SASASEPTMS SGDGIDGDEK SEETHGKDIR  60
RIKCEFCTVV RSKMYLIRAH MVAQHKDELD ASEIYDSNGE KVVYGVGHTC EECGACFRKP  120
AHLKQHMQSH SKERSFACPL EDCPFSYIRK DHLNRHMLTH EGKLFTCPLE GCGKRFSIKA  180
NIQRHVKEMH EDEHECKMDD TKSNQQVICQ EEGCKKAFKY PSQLKKHEES HAKLDYVEVV  240
CCEPGCLKTF TNAKCLRAHN QSCHLYTHCD ICGEKHLRKN IKRHLRAHDE VHSTERLKCS  300
FDGCECSFST KSNLNKHMKA CHDQVRPFEC RVAGCGKTFP YKHVRDNHEK SSCHVYVEGD  360
YEEMDEQLRS RRGGGRKRSA VTVETLTRKR VTIPSEVSLL DDGAEYMRWM LSDGDGSNHA  420
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-119	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG005120.4