PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG001380.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 674aa MW: 71018.5 Da PI: 6.4628

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG001380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.5	1.2e-30	484	569	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r+ +++r+++ lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+ TRIDC6AG001380.1 484 RWPKHEVEALIRVRSGLDNRFQEPGLKGPLWEEVSARMAAAGYgGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 569 8****************************************99*********************98.99999*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
PHFAHFGVAP AAAAAGGIPF TQQFLNHQAA AAGHHHQQHH HLQLFHHEQQ QQQQHHKPQP 60 PPARWAPQQQ HHQHPHQQQQ HHHHQLGLDV EAAAVPESSR ATSGGAAPPG VPPFLAAAMN 120 FKLAVDPGGG SGATDDALND GTGGGGGAGS GMMLHGGGGG DDEAATESRL RRWTGEEETS 180 IKEPTWRPLD IDYIHSTSSS SKRAGAGKEK VATPESPAPV APAANYFKKA GGGDDNAGAA 240 ASAGGGGGNY KLFSELEAIY KPGSGGGGGA GQTGSGSGLT GDDNAILPPP SMADLPGGAL 300 AAAVDAPQAN TSETSAGEDA PAVLQPQPPP PPQASVGEAR RKRKRRRQEQ QQQLTASASF 360 FEQLVQRLIE HQEGLHRQFL DAMERRERER AARDEAWRRQ EADKFAREAA ARAQDRASAA 420 ARETAIIAYL EKLSGETITL PQQPAANPAA PTSADDATSH DAGRELVPYE CGELSLPLMS 480 SSSRWPKHEV EALIRVRSGL DNRFQEPGLK GPLWEEVSAR MAAAGYGGRS AKRCKEKWEN 540 INKYFRKAKE SGKKRPAHAK TCPYFDELDR LYSRSGHGSG ASSGAGNTSA KAIANAIATA 600 DDAANKASSE LLDAVVKYPT DTHYGPPPGF PNDGKEDGAA QHDGEGDVDM GRASGRAGED 660 HDDEAGQSHG HDDD

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

PHFAHFGVAP AAAAAGGIPF TQQFLNHQAA AAGHHHQQHH HLQLFHHEQQ QQQQHHKPQP  60
PPARWAPQQQ HHQHPHQQQQ HHHHQLGLDV EAAAVPESSR ATSGGAAPPG VPPFLAAAMN  120
FKLAVDPGGG SGATDDALND GTGGGGGAGS GMMLHGGGGG DDEAATESRL RRWTGEEETS  180
IKEPTWRPLD IDYIHSTSSS SKRAGAGKEK VATPESPAPV APAANYFKKA GGGDDNAGAA  240
ASAGGGGGNY KLFSELEAIY KPGSGGGGGA GQTGSGSGLT GDDNAILPPP SMADLPGGAL  300
AAAVDAPQAN TSETSAGEDA PAVLQPQPPP PPQASVGEAR RKRKRRRQEQ QQQLTASASF  360
FEQLVQRLIE HQEGLHRQFL DAMERRERER AARDEAWRRQ EADKFAREAA ARAQDRASAA  420
ARETAIIAYL EKLSGETITL PQQPAANPAA PTSADDATSH DAGRELVPYE CGELSLPLMS  480
SSSRWPKHEV EALIRVRSGL DNRFQEPGLK GPLWEEVSAR MAAAGYGGRS AKRCKEKWEN  540
INKYFRKAKE SGKKRPAHAK TCPYFDELDR LYSRSGHGSG ASSGAGNTSA KAIANAIATA  600
DDAANKASSE LLDAVVKYPT DTHYGPPPGF PNDGKEDGAA QHDGEGDVDM GRASGRAGED  660
HDDEAGQSHG HDDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	340	345	RRKRKR
2	340	346	RRKRKRR
3	341	346	RKRKRR
4	341	347	RRKRKRR
5	342	347	KRKRRR
6	343	347	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-36	Trihelix family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG001380.1